BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63130.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939408 jgi|Araly1|939408|scaffold_503599.1 2543 0.0
Ahg486816 jgi|Araly1|486816|fgenesh2_kg.5__2808__AT3G63140.1 69.4 1e-10
> Ahg939408 jgi|Araly1|939408|scaffold_503599.1
Length=1637
Score = 2543 bits (1377), Expect = 0.0
Identities = 1518/1587 (96%), Gaps = 6/1587 (0%)
Strand=Plus/Plus
Query 257 CACAGAACCGTGTTTTGTCAGTGAAGATGTGGCCACCGAGTAAGAGTACCCGTCTCATGC 316
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 31 CACAGAACCGTGTTTTGTCAGTCAAGATGTGGCCACCGAGTAAGAGTACCCGCCTCATGC 90
Query 317 TTGTTGAGCGGATGACCAAGAACATTACCACCCCTTCCATCTTCTCCAGGAAGTACGGTC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 TTGTTGAGCGGATGACCAAGAACATTACCACCCCTTCCATCTTCTCCAGGAAGTACGGTC 150
Query 377 TTTTGTCTGTTGAAGAGGCTGAGCAAGACGCCAAGCGCATTGAAGATTTGGCCTTTGCTA 436
||||| || | |||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 151 TTTTGACTCTCCAAGAGGCTGAGCAAGACGCCAAGCGCATTGAAGACTTGGCTTTTGCTA 210
Query 437 CTGCCAACAAACACTTCCAGAACGAGCCTGATGGTGATGGCACTTCTGCTGTTCACGTCT 496
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 211 CTGCCAACAAACACTTCCAGAACGAGCCTGATGGTGATGGAACTTCTGCCGTTCAGGTCT 270
Query 497 ATGCTAAAGAATCCAGCAAGCTCATGCTTGATGTCATCAAACGTGGTCCACAGGAAGAAT 556
|||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 271 ATGCTAAAGAATCCAGTAAGCTCATGCTTGAAGTCATCAAACGAGGTCCCCAGGAAGAAT 330
Query 557 CCGAGGTTGAGGTGAGCAAGGATGGTGATGTCTTTTTTGATATATCTGGTGGGAGCAGAG 616
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 331 CCGAGGTTGAGGTGAGCAAGGATGGGGATATCTTTTTTGATATATCTGGTGGGAGCAGAG 390
Query 617 CTTTTATTGAAGAAGAGGAGGCACGCGACCTTTTGAGGCCTCTGGCTGA-CCCGCGTAAC 675
| ||||| || ||||||||||||||| | |||||||||||| ||||| | |||| ||||
Sbjct 391 CATTTATCGACGAAGAGGAGGCACGCCAGCTTTTGAGGCCTTTGGCT-AGGCCGCATAAC 449
Query 676 TCCTAT-ACCAAAATCCGTTTTAGCAACAGGAGTTTTGGGTCTGAAGCAGCCAAATTTGC 734
|||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 450 TCCT-TCACCAAAATCCGTTTTAGCAACAGGAGTTTTGGCTCTGAAGCTGCCAAATTTGC 508
Query 735 TGCGAGCGTTTTGTCTTCCATCAAGGATCAGCTGACGGAAGTGGATCTCTCGGATTTTGT 794
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TGCCAGCGTTTTGTCTTCCATCAAGGATCAGCTGACGGAAGTGGATCTCTCGGATTTTGT 568
Query 795 TGCAGGAAGACCAGAGGCTGAAGCGCTTGAAGTCATGAATATGTTTTCATCTGCTTTAGA 854
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 569 TGCAGGCAGACCAGAGGCCGAAGCACTTGAAGTCATGAATATGTTTTCATCTGCTTTGGA 628
Query 855 GGGTTCTAAGCTTAGGTATCTGAATCTCTCGGACAATGCTTTGGGAGAAAAGGGAATTAG 914
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GGGTTCTAAGCTGAGGTATCTGAATCTCTCGGACAATGCTTTGGGAGAAAAGGGAATTAG 688
Query 915 GGCATTTGCTTCTCTCATCAATTCTCAGCATGACTTGGAGGAGCTCTATCTGATGAATGA 974
||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 689 GGCATTTGCTTCTCTCATCAAGTCTCAGAATGACTTGGAGGAGCTTTATCTGATGAATGA 748
Query 975 TGGCATTTCCGAGGATGCTGCACGTGCAGTTCGTGAGCTTCTCCCTTCTACTGACAAAAT 1034
||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||
Sbjct 749 TGGCATTTCCGAGGATGCTGCACATGCAGTTCGTGAGCTACTTCCTTCTACTGGCAAAAT 808
Query 1035 CAGGGTTCTTCAGTTTCATAACAACATGACAGGAGATGAAGGAGCAACT-GCCATTGCAG 1093
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 809 CAGGGTTCTTCAGTTCCATAACAACATGACAGGAGATGAAGGAGCAA-TCGCCATTGCAG 867
Query 1094 AGATTGTCAGGGAGTGTCCATCTTTGGAAGATTTCCGGTGTTCATCTACAAGGATTGGTT 1153
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 AGATTGTCAGGCAGTGTCCATCTTTGGAAGATTTCCGGTGTTCATCTACAAGGATTGGTT 927
Query 1154 CAGAAGGTGGTGTTGCACTAGCTGAAGCACTTGAACACTGTAGCCACTTGAAGAAACTTG 1213
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CAGAAGGTGGTGTTGCGCTAGCTGAAGCACTTGAACACTGTAGCCACTTGAAGAAACTTG 987
Query 1214 ATCTTCGTGACAACATGTTTGGAGTCGAAGGTGGAATTGCCCTGGCCAAGACTTTATCAG 1273
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 ATCTTCGCGACAACATGTTTGGAGTCGAAGGTGGAATTGCCCTGGCCAAGACTTTATCAG 1047
Query 1274 TCTTGACTCATTTAACCGAGATCTATATGAGTTACCTGAACTTGGAGGATGAGGGAACAG 1333
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1048 TGTTGACTCATTTAACTGAGATCTATATGAGTTACCTGAACTTGGAGGATGAGGGAGCAG 1107
Query 1334 AGGCACTTTCTGAAGCTCTACTTAAGTCCGCCCCTTCTCTTGAAGTTCTAGAATTGGCTG 1393
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1108 AGGCACTTTCTGAAGCTCTACTTAAGTCTGCCCCTTCTCTTGAAGTTCTAGAATTGGCTG 1167
Query 1394 GTAACGACATTACTGTAAAATCCACTGGAAATTTGGCAGCTTGCATCGCCTCCAAACAGT 1453
| ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1168 GGAACGATATTACTGTAAAATCCGCTGGAAATTTGGCAGCTTGCATTGCCTCCAAACAGT 1227
Query 1454 CTCTTGCAAAGCTGAATTTATCTGAGAATGAACTCAAAGACGAAGGGACTATCTTAATTG 1513
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 CTCTTTCAAAGCTGAATTTATCTGAGAATGAACTCAAAGACGAAGGGACTATCTTAATTG 1287
Query 1514 CAAAGGCAGTTGAAGGTCATGATCAGTTAGTTGAAGTTGACCTGAGCACCAACATGATCA 1573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1288 CAAAGGCAGTTGAAGGTCATGATCAGTTAGTTGAAGTTGACCTGAGCACCAACATGATAA 1347
Query 1574 GAAGAGCTGGGGCAAGGGCCTTGGCACAAACTGTTGTGAAGAAAAATACTTTCAAGCTTC 1633
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1348 GAAGAGCTGGGGCAAGAGCCTTGGCACAAACTGTTGTGAAGAAACATACTTTCAAGCTTC 1407
Query 1634 TGAACATCAATGGAAACTTCATATCTGAGGAAGGTATTGACGAGGTAAATGACATGTTTA 1693
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 TGAACATTAATGGAAACTTCATATCTGAGGAAGGTATTGACGAGGTAAATGACATGTTTA 1467
Query 1694 AGGACTGTCTGGACAAGCTTGTTCCTTTGGACGACAATGACCCTGAAGGAGAAGATTTTG 1753
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1468 AGGACTCTCTTGACAAGCTTGTTCCTTTGGATGACAATGACCCTGAAGGAGAAGATTTTG 1527
Query 1754 AAGATGAAGACGAAGAGGAGGAAGGCGAAGATGGCAATGAATTGGAATCAAAGCTTGGAA 1813
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1528 AAGATGAAGACGAAGAGGAGGAAGGCGAAGATGACAATGAATTGGAATCAAAGCTTGGAG 1587
Query 1814 GTCTGAAAATCAAGCAAGGGGAGGAAT 1840
|||||||||||||||||| ||||||||
Sbjct 1588 GTCTGAAAATCAAGCAAGAGGAGGAAT 1614
> Ahg486816 jgi|Araly1|486816|fgenesh2_kg.5__2808__AT3G63140.1
Length=1444
Score = 69.4 bits (37), Expect = 1e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 2001 TCTTTTGGTTATGAATATTTAAATGATCTTTTAGCTGAAA 2040
|||| |||||||||||||||||||||||||||||||||||
Sbjct 1444 TCTTGTGGTTATGAATATTTAAATGATCTTTTAGCTGAAA 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5