BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63140.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486816 jgi|Araly1|486816|fgenesh2_kg.5__2808__AT3G63140.1 2206 0.0
> Ahg486816 jgi|Araly1|486816|fgenesh2_kg.5__2808__AT3G63140.1
Length=1444
Score = 2206 bits (1194), Expect = 0.0
Identities = 1368/1451 (94%), Gaps = 16/1451 (1%)
Strand=Plus/Plus
Query 1 GTACAAGAGCCTTACAAAATTCTTCTGGTTCTCTGAGGATCAAACCACCACAAGTCAGAA 60
|||||||||||||||| | |||||||||||||||||||||| || ||| ||||||||||
Sbjct 1 GTACAAGAGCCTTACATATTTCTTCTGGTTCTCTGAGGATC-AA--ACCTCAAGTCAGAA 57
Query 61 CAGAGTGAGGT-AATCATTACCAACAAAAAATGGCGGCTTTATCATCCTCCTCTCTGTTT 119
|||||| |||| |||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 58 CAGAGTAAGGTAAATC-TTAACAAAAAAAAATGGCGGCTTTATCATCCTCCTCTCTGTTT 116
Query 120 TTCTCTTCCAAGACAACTTCTCCGATCAGCAATCTCCTGATCCCGCCAtctctccaccgc 179
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 117 TTCTCCTCCAAAACAACTTCTCCGATCAGTAATCTCCTGATCCCGCCATCTCTCCACCGC 176
Query 180 ttctctctaccctcttcatcttcctcc-ttt--tc-ctctc-tc-tcttcttcttcttct 233
||| ||||||||||||||||||||||| ||| || ||||| || |||||||||||||||
Sbjct 177 TTCGCTCTACCCTCTTCATCTTCCTCCTTTTCCTCTCTCTCTTCTTCTTCTTCTTCTTCT 236
Query 234 tcttcttcttctctcttgacattctctctgaggacttctcGAAGGTTATCTCCTCAAAAA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTTCTTCTTCTCTCTTGACATTCTCTCTGAGGACTTCTCGAAGGTTATCTCCTCAGGGC 296
Query 294 TTTACCGTTAAGGCCAGCTCCGTCGGTGAGAAGAAGAATGTACTTATAGTCAACACCAAC 353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 297 TTTACCGTTAAGGCCAGCTCCGTCGGTGATAAGAAGAATGTACTTATAGTCAACACCAAC 356
Query 354 AGTGGCGGTCACGCCGTGATCGGGTTTTACTTCGCCAAAGAGCTTCTCTCCGCCGGCCAC 413
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 AGCGGCGGTCACGCCGTGATCGGGTTTTACTTCGCCAAAGAGCTTCTCTCCGCCGGACAT 416
Query 414 GCCGTCACCATCTTGACCGTCGGCGATGAATCTTCCGAAAAGATGAAGAAACCTCCTTTC 473
| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 GGCGTCACCATCATGACCGTCGGCGATGAATCTTCCGACAAGATGAAGAAACCTCCTTTC 476
Query 474 AACCGATTCTCCGAAATTGTTAGCGGCGGAGGAAAGACGGTGTGGGGGAACCCGGCCAAT 533
|||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||| ||
Sbjct 477 AACCGATTCTCCGAAATTATCAGCGGCGGAGGAAAGACGGTGTGGGGAAACCCTGCCGAT 536
Query 534 GTTGCCAATGTGGTCGGAGGTGAAACATTTGACGTTGTCCTTGACAACAATGGCAAGGAT 593
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTGCCAATGTGGTCGGAGCTGAAACATTTGACGTTGTCCTTGACAACAATGGCAAGGAT 596
Query 594 TTGGATACTGTTAGGCCAGTGGTGGATTGGGCTAAAAGCTCCGGCGTCAAGCAATTCTTG 653
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 TTGGATACTGTCAGGCCAGTGGTGGATTGGGCTAAAAGCTCCGGCGTGAAGCAATTCTTG 656
Query 654 TTCATAAGTAGCGCCGGGATCTACAAGTCCACCGAACAACCTCCTCACGTTGAAGGGGAC 713
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTCATCAGCAGCGCCGGGATCTACAAGTCCACCGAACAACCTCCTCACGTTGAAGGGGAC 716
Query 714 GCAGTTAAAGCCGACGCTGGTCACGTGGTG-GTGGAGAAGTACTTAGCCGAAACATTCGG 772
||||| ||||| ||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 717 GCAGTCAAAGCTGACGCAGGTCACGTGG-GAGTGGAGAAGTACTTAGCCGAAACATTCGG 775
Query 773 GAACTGGGCCTCCTTTCGACCGCAGTACATGATCGGCTCTGGCAACAACAAAGACTGCGA 832
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 776 GAACTGGTCCTCGTTTCGACCACAGTACATGATCGGCTCTGGCAACAACAAAGACTGCGA 835
Query 833 AGAATGGTTCTTCGACCGGATTGTGAGGGACAGAGCAGTGCCAATCCCAGGATCAGGATT 892
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 836 AGAATGGTTCTTCGACCGGATTGTGAGGGATAGAGCAGTGCCAATCCCAGGATCAGGATT 895
Query 893 GCAGCTAACCAACATATCCCACGTGAGGGACTTGTCTTCCATGCTTACTTCTGCCGTTGC 952
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 896 GCAGCTAACCAACATATCCCACGTGAGGGACTTGTCTTCGATGCTGACTTCTGCCGTAAC 955
Query 953 CAACCCAGAGGCTGCTTCCGGCAACATCTTCAACTGCGTTAGCGACAGAGCCGTTACTCT 1012
|||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 956 CAACCCCGAGGCTGCATCCGGAAACATCTTCAACTGCGTTAGCGACAGAGCCGTCACTCT 1015
Query 1013 TGACGGTATGGCCAAGCTCTGTGCTGCCGCTGCTGGCAAAACTGTTGAGATCGTTCATTA 1072
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1016 TGACGGTATGGCCAAGCTCTGTGCTGCCGCTACTGGCAAAACGGTTGAGATCGTTCATTA 1075
Query 1073 TGACCCTAAAGCCATTGGGGTTGACGCCAAGAAGGCTTTTCTATTCAGAAACATGCATTT 1132
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1076 TGACCCTAAAGCCATTGGCGTTGACGCCAAGAAGGCTTTTCCATTCAGAAACATGCATTT 1135
Query 1133 CTACGCAGAGCCAAGAGCCGCTAAGGACTTATTAGGGTGGGAGAGTAAAACGAATCTGCC 1192
|||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||
Sbjct 1136 CTACGCAGAGCCAAGAGCAGCAAAGGAGATATTAGGGTGGGAAAGTAAAACGAATCTGCC 1195
Query 1193 TGAAGATCTCAAGGAGAGATTCGAAGAGTATGTGAAGATTGGCAGAGACAAGAAAGAGAT 1252
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGAAGATCTCAAGGAAAGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAAGAGAT 1255
Query 1253 TAAGTTTGAGTTAGACGATAAGATACTCGAAGCCCTCAAAACTCCAGTGGCCGCTTGATC 1312
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1256 CAAGTTTGAGTTAGACGATAAGATACTCGAAGCCCTCAAAACTCCAGTGGCGGCTTGATC 1315
Query 1313 AAA-TACGCCATAAAGTTTGTTCTTCATTTGTAACTTCTTATGCTACACTGTGCTCTTTC 1371
||| || |||||||||||| ||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1316 AAAATAGGCCATAAAGTTTCTTCTTCAGTTGTAACTTCTAATGCTACCCTGTGCTCTTTT 1375
Query 1372 ATTTCCCACGGCTCATATGAGATGAACATGATTTCAGCTAAAAGATCATTTAAATATTCA 1431
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1376 -TTTCCC-CGGCTCATATGAGAGGAACATGATTTCAGCTAAAAGATCATTTAAATATTCA 1433
Query 1432 TAACCAAAAGA 1442
|||||| ||||
Sbjct 1434 TAACCACAAGA 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5