BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63150.1
Length=2360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486817 jgi|Araly1|486817|fgenesh2_kg.5__2809__AT3G63150.1 3282 0.0
> Ahg486817 jgi|Araly1|486817|fgenesh2_kg.5__2809__AT3G63150.1
Length=2066
Score = 3282 bits (1777), Expect = 0.0
Identities = 1981/2077 (95%), Gaps = 23/2077 (1%)
Strand=Plus/Plus
Query 30 TGTCGGGTCAACCCGGTTAGATATATGGAGCATCCATCCTCGGCCGGC-AAGT----TAC 84
||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||
Sbjct 1 TGTCGGGTCAACCCGAATAGATATATGGAGCATCCATTCTCGGCCGGCAAAGTAACAAAC 60
Query 85 ATCGTTGGTAGATCGATCAATCTCATCTCCGAAACAATAACCGCCAATTTCCTTCCTCTC 144
||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 61 ATCGTTGGT--A--GATCAATCTCATCTCCGAAACAATAACCGCCAATTTCC-T-CTCTC 114
Query 145 TA-AAT-C-TCTCCGATGATGCTCGGTGGAAAGTCCTCCGCCGG-AGGCCGTACAAGCCT 200
| | | ||||||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct 115 -AGTTTCCGACTCCGATGATGCTCGGTGGAAGGTCCTCTACCGGTA-GCCGTACAAGCCT 172
Query 201 TAGAGTCGCCGTCGCTGGCGACAAAGGAACCGGTAAATCCAGCCTGATCTCTGCCGTCGC 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CAGAGTCGCCGTCGCTGGCGACAAAGGAACCGGTAAATCCAGCCTGATCTCTGCCGTCGC 232
Query 261 CTCCGAGACTTTCCCGGATAATGTCCCTCGCGTCCTTCCTCCGATTACTCTCCCTGCCGA 320
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 233 CTCCGAAACTTTCCCGGATAATGTCCCTCGCGTCCTTCCTCCGATTACTCTCCCCGCCGA 292
Query 321 CGCTTTCCCTGACTATATACCTATCACCATCGTCGATACTCCCTCAAGTATTGACAATCG 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 293 CGCTTTCCCTGACTATATACCTATCACCATCGTCGATACTCCCTCAAGTATTGACAATAG 352
Query 381 GATTAAGCTCATTGAAGAATTCAGGAAGGCTGATGTGGTCCTTCTCACTTATGCTTGTGA 440
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 353 GATTAAGCTCATTGAAGAATTCAGGAAGGCTGATGTGGTCATTCTCACCTATGCATGTGA 412
Query 441 TCAGCCTTCAACTCTTGATCGCTTGAGTTCTTATTGGCTCCCTGAGCTCCGGCGTTTAGA 500
|||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 413 TCAGTCTGCGACTCTTGATCGCTTAAGTTCTTATTGGCTCCCTGAGCTCCGGCGTTTAGA 472
Query 501 GATCAAAGCACCTGTGATTGTGGTGGGCTGCAAGCTTGATTTACGTGATGAACGATCTCC 560
||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 473 GATCAAAGCTCCAGTAATTGTGGTGGGCTGCAAGCTTGATTTACGGGATGAACGATCTCC 532
Query 561 CGCCAGACTAGAGGATATTATGTCACCAATCATGAAGGAGTACCGAGAGATAGAAACCTG 620
||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 533 CGCAAGACTAGAGGATATCATGGCACCAATCATGAAGGAGTACAGAGAGATAGAAACCTG 592
Query 621 CATTGAGTGTTCTGCATTGACCCTTATACAGGTCCCTGATGTTTTCTATTTTGCATCAAA 680
|| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 593 TATAGAGTGTTCTGCTTTGACCCTTATACAGGCCCCTGATGTTTTCTATTTTGCATCAAA 652
Query 681 AGCGGTCCTTCATCCAACATTTCCCTTGTTTGATCAAGAAAAACAATGTTTGAAACCCCG 740
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 653 AGCGGTCCTTCACCCAACATTTCCGTTGTTTGATCAAGAAAAACAATGTTTGAAACCTCG 712
Query 741 CCTCCGCAGGGCAGTTCAAAGAATATTCAACCTTTGTGATCATGATTTGGATGGTGCCCT 800
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 713 CCTCCGCAGGGCAGTACAAAGAATATTCAACCTCTGTGATCATGATTTGGATGGTGCCCT 772
Query 801 TAATGACGCAGAGTTGAATGATTTCCAGGTAAATTGTTTTGGTGCCCCACTTGACCCTGT 860
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 773 TAATGACACAGAGTTGAATGATTTTCAGGTAAATTGTTTTGGTGCCCCACTTGACCCTGT 832
Query 861 TGAACTTATGGGAGTTAAGAAAGTGGTACAAGAAAGGCAACCAGATGGAGTAACTGACCT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 833 TGAACTTATGGGAGTTAAGAAAGTGGTACAAGAAAGGCAACCAGATGGAGTAACTGATCT 892
Query 921 TGGTCTTACACTTCCGGGTTTCCTTTTTCTTTTCTCTCTATTCATCGAGAGAGGTCGCCC 980
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 893 TGGTCTTACACTTCCGGGTTTCCTTTTTCTTTTTTCTCTATTCATCGAGAGAGGTCGCCC 952
Query 981 TGAGACAGCATGGGCTATCCTACGGAAATGTGGTTACAATGATTCTTTAGAACTCCA-TG 1039
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 953 TGAGACAGCATGGGCTATCCTACGGAAATATGGTTACAATGATTCTTTAGAACT-CAGCG 1011
Query 1040 CTGAGTTACTACCCGTTCCAGCTAAGCAGTCTCCTGATCAGAGCATCGAGCTAACAAACG 1099
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1012 CCGAGTTACTACCCGTTCCAGCAAAGCAGTCTCCTGATCAGAGCATCGAGCTAACAAACA 1071
Query 1100 AAGCTATGGACTTTCTGAGTGGAATCTTCCAGTTATATGACCTTGATAATGATGGAGCGT 1159
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AAGCCATGGACTTTCTCAGTGGAATCTTCCAGTTATATGACCTTGATAATGATGGAGCGT 1131
Query 1160 TACAGCCAGCTGAGCTAGATGATTTATTTCAAACAGCTCCAGATAGTCCTTGGCTTGAGG 1219
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1132 TACAGCCAGCTGAGCTAGATGATTTGTTTCAAACAGCTCCAGATAGTCCTTGGCTTGAGG 1191
Query 1220 ATCCTTATAAAGA-AGCTGCAGAGAAAACGCCAGGCGGAAGTTTGACAATCAATGGGTTT 1278
|||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1192 CTCCTTATAAAGATA-CTGCAGAGAAAACGCCAGGCGGACGTTTGACAATCAATGGGTTT 1250
Query 1279 CTGTCTGAGTGGGCTCTAATGACACTTCTAGATCCTCGAAAAA-GTTTGGCAAACCTGAC 1337
||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 1251 CTGTCTGAGTGGGCTCTAATGACTCTTCTAGATCCTC-AAAAATGTTTGGCAAACCTGAT 1309
Query 1338 ATATATCGGTTATGGTCACGACCCAGCTTCAACATTTTCTGTTACTAGGAAAAGATCAGT 1397
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1310 ATATATCGGTTATGGTCACGACCCAGCTTCAACATTTGCTGTTACTAGGAAAAGATCAGT 1369
Query 1398 GGATCGTAAGAAACAGCGAACAGAAAGGAATGTGTTTCAGTGCTTTGTATTTGGCCCTAA 1457
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 GGATCGTAAGAAGCAGCGAACAGAAAGGAATGTGTTTCAGTGCTTTGTATTTGGCCCTAA 1429
Query 1458 AAAATCTGGAAAGTCTGCACTCCTCGATTCTTTCTTAGGAAGGAAATTTTCAAACAGCTA 1517
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1430 AAAATCTGGAAAGTCTGCACTCCTTGATTCTTTCTTAGGAAGGAAATTTTCGAACAGCTA 1489
Query 1518 TAAGGCAACAATGGGTGAACGATATGCAGCAAATGTCATTGATCAGCCTGGGGGTTCTAA 1577
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 TAAGGCAACAACGGGTGAACGATATGCAGCAAATGTCATTGATCAGCCTGGGGGTTCTAA 1549
Query 1578 GAAAACCCTCATATTGCGGGAAATACCAGAGGACAGAGTTAAAAAGTTTCTGACAAACAA 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1550 GAAAACCCTCATATTGCGGGAAATACCAGAGGACAGAGTTAAAAAGTTTCTGACAAATAA 1609
Query 1638 GGAATCGTTGGCAGCATGTGATGTTGCTGTGGTTGTCTATGACAGTTCGGACGTATACTC 1697
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GGAATTGTTGGCAGCATGTGATGTTGCTGTGGTTGTCTATGACAGTTCGGACGTATACTC 1669
Query 1698 ATGGAGAAAGGCGAGGGAAATACTGATGGAGGTAGCAAGGAGGGGAGAAGAGAGAGGTTA 1757
||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1670 ATGGAAAAAAGCGAGGGAAATACTGATGGAGGTAGCAAGGAGGGGAGAAGAGAGCGGTTA 1729
Query 1758 CGGGACCCCTTGTCTTCTGGTTGCGGCCAAAGATGATTTGGATCCATATCCAATGTCAGT 1817
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1730 TGGGACCCCTTGTCTTCTTGTTGCGGCCAAAGATGATCTGGATCCATATCCAATGTCAGT 1789
Query 1818 GCAGGAGTCTGATAGGGTTTGCATGGAATTGGGGATAGACATCCCTGTGTCATTAAGCAT 1877
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1790 GCAAGAGTCTGATAGGGTTTGCATGGAATTGGGGATAGACATCGCTGTGTCATTAAGCAT 1849
Query 1878 GAAACTTGGGGAGCCAAATAGTCTCTTCTCAAGAATCGTGAGTACAGCAGAGAACCCTCA 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 GAAACTTGGGGAGCCAAATAGTCTCTTCTCAAGAATCGTGAGTACAGCAGAGAACCCTCA 1909
Query 1938 CATGAGCATTCCAGAGACAGAGTCAGGAAGAAGAAGCAGGAATATCCGCCAACTCGTGAA 1997
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1910 CTTGAGCATTCCAGAGACAGAGTCAGGAAGAAGAAGCAAGAATATCCGCCAACTCGTGAA 1969
Query 1998 TAGCTCACTTCTATTTGTCTCAGTGGGTACAGCTGTTGGGTTTGCCGGATTAGCAGCTTA 2057
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1970 TAGCTCACTTCTATTTGTCTCAGTGGGTACAGCTGTTGGGTTTGCCGGATTGGCAGCTTA 2029
Query 2058 CCGTGCTTATTCCGCAAGGAAGAATGCTTGAAGCTTT 2094
||||||||||||||||||||||||||||||||| |||
Sbjct 2030 CCGTGCTTATTCCGCAAGGAAGAATGCTTGAAGATTT 2066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88902631830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5