BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G63160.1

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486818 jgi|Araly1|486818|fgenesh2_kg.5__2810__AT3G63160.1         361    3e-99


> Ahg486818 jgi|Araly1|486818|fgenesh2_kg.5__2810__AT3G63160.1
Length=416

 Score =  361 bits (195),  Expect = 3e-99
 Identities = 222/235 (94%), Gaps = 2/235 (1%)
 Strand=Plus/Plus

Query  36   aagaagaagCAGCAGCAATGGTGGAGAAGTCAGGAGGAGAAGTCAATTTCCCAAAATTGG  95
            ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  8    AAGAAGAAGAAGCAGCAATGGTGGAGAAGTCAGGAGGAGAAGTCCATTTCCCAAAACTGG  67

Query  96   AGAAACCAACAGGCAAGAAACAGACAGCGACGGTTGTTGTGGGAGTGTTGGCGGTGGGAT  155
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  68   AGAAACCAACAGGCAAGAAACAGACAGCGACGGTTGTTGTGGGAGTGTTGGCAGTGGGAT  127

Query  156  GGCTGGCGATAGAGCTCGTGTTTAAGCCATTGTTCAAGAAGCTGAGCTCCTCCAAGGACA  215
             | ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct  128  TGTTGGCGATAGAGCTCGTGTTTAAGCCGTTGTTCAAGAAGCTGAGCTCATCAAAGGACA  187

Query  216  AATCCGATTCCGACGATGCCACCG-TCCCTCCCCCGTCGGGCGCCTGAATATGGT  269
            |||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||
Sbjct  188  AATCCGATTCCGACGATGCCACCGCTCC-TCCCCCGTCGGTCCCCTGAATATGGT  241


 Score =  137 bits (74),  Expect = 6e-32
 Identities = 96/106 (91%), Gaps = 3/106 (3%)
 Strand=Plus/Plus

Query  407  CCCTTTCAAATAAAATCCCGACAAGG-ATAATAAAATCAATGAGAGA-TACGATGTAATT  464
            |||||| |||||||||||||||| || ||| |||||||||||||| |  |||||||||||
Sbjct  311  CCCTTTTAAATAAAATCCCGACAGGGAATACTAAAATCAATGAGATACGACGATGTAATT  370

Query  465  GGTTTTTATTTTCTTGTTTGTCTTGGGTTTTGTTGGTAATAAATAA  510
            || |||||||||| || |||||||||||||||||||||||||||||
Sbjct  371  GG-TTTTATTTTCCTGATTGTCTTGGGTTTTGTTGGTAATAAATAA  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001483322


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5