BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63170.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486819 jgi|Araly1|486819|fgenesh2_kg.5__2811__AT3G63170.1 1360 0.0
> Ahg486819 jgi|Araly1|486819|fgenesh2_kg.5__2811__AT3G63170.1
Length=1145
Score = 1360 bits (736), Expect = 0.0
Identities = 941/1031 (91%), Gaps = 50/1031 (5%)
Strand=Plus/Plus
Query 257 AAGAGTGTAACAAACAAAC-AAAAAAGTTAGTGAACTACTAAACAACACTCACACCAAAA 315
||||||||||||||| ||| |||||| ||| |||| | |||||||||||||| ||
Sbjct 154 AAGAGTGTAACAAAC-AACTAAAAAA---AGTTAACT--T--ACAACACTCACACC--AA 203
Query 316 AGACGACGATGGTTTCGTTTCGCTTCCCTTTCTCGTTTTCTCAGCCCCCGCGTGCCACCA 375
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 A-A-GACGATGGTTTCGTTTCGCTTCCCTTTCTCGTTTTCTCAGCCCCCGCGTGCCACGT 261
Query 376 CGTCATTCTCCGGATTCTCCATTTCCGCTGTCGCTGTCTCCGTCACCGTTGGCGCCGCAG 435
||||||||||||| ||||||||||||||||||||||||||||||| | ||| | |
Sbjct 262 CGTCATTCTCCGGTTTCTCCATTTCCGCTGTCGCTGTCTCCGTCA-C-----CGCTG--G 313
Query 436 CCGCCGGAGCTGCGATCGCGGCGTCCCGGAATCCCAGCCATCCGATTCTAGAGTGGGCCT 495
|||||||||||||||||||||||| |||||||||| ||||| ||| | ||||||||||
Sbjct 314 -CGCCGGAGCTGCGATCGCGGCGTCGCGGAATCCCAATCATCCAATTGTGGAGTGGGCCT 372
Query 496 TCTCCTCTCACCGTTCGTCTCT-TTCACCATGGGGATCTATAACTCTAG-C-A---GA-- 547
| ||||||||||| |||||||| || ||||||||||||||||||||||| | | |
Sbjct 373 TATCCTCTCACCGCTCGTCTCTGTT-ACCATGGGGATCTATAACTCTAGCCGACTCTACC 431
Query 548 --CGAATCCGTTGTCGAACCTAAGACCGGTTTCTCGTTTCCCGCTTCAATCGGAGATTCC 605
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 432 CCCGAATCCGTTGTGGAACCTAAGACAGGTTTCTCGTTTCCCGCTTCAATCGGAGATTCG 491
Query 606 CGGCGATTACTCGGCGTCGGCCTGAGGAAGAAGAGCTTACTGGGATTGAAGAACATCGAT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CGGCGATTACTCGGCGTCGGCCTGAGGAAGAAGAGCTTACTGGGATTGAAGAACATCGAT 551
Query 666 GTCTACGCCTTCGGCGTGTATGCTGATTGTGATGATGTGAAGAAACTTGTGGGAGACAAG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GTCTACGCCTTCGGCGTGTATGCTGATTGTGATGATGTGAAGAAACTTGTGGGAGACAAG 611
Query 726 TACGCAAATCTTCCAGCTTCAGAGATCAGGGGAAACAAGTCATTCATGGATGATCTCATG 785
||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 612 TACGCAAATCTCCCAGCTTCGGAGATCAGGGGAAACAAGGCATTCATGGATGATCTCATG 671
Query 786 GAAGCCGATATTAAGATGACGATAAGGCTACAGATTGTCTACGGCAAACTCAACATCCGA 845
|||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 672 GAAGCCGATATTAAGATGACTATAAGGTTGCAGATTGTCTACGGCAAACTCAACATCCGA 731
Query 846 TCCGTGCGTAATGCTTTCCAAGAGTCTGTTGGAAACAGACTCAAGAAGTTCGGTGGCTCA 905
|||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 732 TCCGTGCGCAATGCTTTTCAAGAATCTGTTGGAAACAGACTCAACAAGTTCGGTGGCTCA 791
Query 906 GACAATGACGAGTTGCTTCAAAGCTTCACTAGCCTCTTCAAAGATGAGTATAAGATTCCA 965
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GACAACGACGAGTTGCTTCAAAGCTTCACTAGCCTCTTCAAAGATGAGTATAAGATTCCA 851
Query 966 AGAAACTCCACCATTGATTTGACAAAAGATCCGGGCCATGTACTCAGCGTTGCAATTGAG 1025
||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||
Sbjct 852 AGAAACTCCACCATTGATTTGACAAAAGAACCAGGTCATGTACTCTGCGTTGCAATTGAG 911
Query 1026 GGGAACCATGTCGGGAGTGTGAAGAGCCATCTCTTGTGTAGATCAATCTTAGACTTGTAC 1085
|| ||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 912 GGAAACCACGTGGGGAGTGTGCAGAGCCAACTCTTGTGTAGATCAATCTTAGACTTGTAC 971
Query 1086 ATTGGTGAAGAACCGTTTGATAAGAATGCAAGAGAAGATTTTCTAGACAATGCAGCTTCT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 ATTGGTGAAGAACCGTTTGATAAGAATGCAAGAGAAGATTTTCTAGACAATGCAGCTTCT 1031
Query 1146 CTAGCCTTCGACAACTAGTTCACAACAAAATGTTGCTTTCTTTCTTTCTTAACGGATTCT 1205
|||||||||||||||||||| | ||| | ||||||| ||||||||||
Sbjct 1032 CTAGCCTTCGACAACTAGTT-AG--CAA--T----CTTTCTT--------AACGGATTCT 1074
Query 1206 CTATATATACGGCATAATGTTGAGGAATGTATTTGAAATAAATTGCTTGGGGAATTGGGT 1265
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1075 CTATATATACGGCATAATGTTGAGGAATGTATTTGAAATAAATTGCTTGGGGAAATGGGG 1134
Query 1266 TTTGTTAGTCT 1276
|||||||||||
Sbjct 1135 TTTGTTAGTCT 1145
Score = 241 bits (130), Expect = 1e-62
Identities = 152/162 (94%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 73 AAAATGAGCAAAAGAAAGCCCAAATAGATCCTGTCCGGAATAGTAAAACGAGGAAAGCCC 132
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1 AAAATGAGCAAAAGAAAGCCCAAATAGATCCTGTCCGGAACATTAAAACGAGGAAAGCCC 60
Query 133 AAACATAG-CATGTCCGGAAGAATCGAGGTCACGTGCAATACACGTGTCAATTAAAGCAG 191
||| | || || |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 61 AAATAGAGCCA-GTCCGGAAGAGTCGAGGTCACGTGCAATACAGGTGTCAATTAAAGCAG 119
Query 192 GAGTTATTGTCGCTGAATCATATCAATGGCGTGTGA-AGTGT 232
|||||||||||||||||||||||||||||||||| | |||||
Sbjct 120 GAGTTATTGTCGCTGAATCATATCAATGGCGTGTAAGAGTGT 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5