BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63180.1
Length=3238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486820 jgi|Araly1|486820|fgenesh2_kg.5__2812__AT3G63180.1 3408 0.0
> Ahg486820 jgi|Araly1|486820|fgenesh2_kg.5__2812__AT3G63180.1
Length=3241
Score = 3408 bits (1845), Expect = 0.0
Identities = 2337/2561 (91%), Gaps = 88/2561 (3%)
Strand=Plus/Plus
Query 747 AGAGATTTGCGGTTTATTCACTTGTAAAGCGAGATTCGACTCAGCCAACATTGATAAATC 806
||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 700 AGAGAATTGCGGTTTAATCACTTGTAAAGCGAGAATCGACTCAGCCAACATTGATAAATT 759
Query 807 GACCAACGGAGCTAAAACTTCGTTAGTAGTCG-CC----T--C-A-GATATTG-----TG 852
|||||||||| ||||||| ||||||||||||| || | | | || | | |
Sbjct 760 GACCAACGGAACTAAAACATCGTTAGTAGTCGCCCATATTCACAAGGAGAAAGAACCAAG 819
Query 853 GAT-GA---GAAAG-AAC-CAA-GGGTATCAGAGGGTCCACAATTGGAAAACAACAAAG- 904
| | || | | | | || |||||||||| |||||||||||||||||||||||||
Sbjct 820 GCTAGATTCGGAGGTGTCAAAAGGGGTATCAGATGGTCCACAATTGGAAAACAACAAAGT 879
Query 905 --ATGAGAGTCATTGTA-T--TAGTAAGCTCGATATTCATCTCATGGTTCCTCCAACATT 959
||||||||||| || | ||||||||||||||| |||||||||||||||||||| |
Sbjct 880 TTTTGAGAGTCATTCTACTAGTAGTAAGCTCGATATGGATCTCATGGTTCCTCCAACAAT 939
Query 960 GCCTTCCTCTTCAGGGAGAGTTTCTCTTCTCCCACTCGTTTCTGATTATT-----GCAAG 1014
||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 940 GCCTTCCTCGCCAGGGAGAGTTTCTCTTCTTCCACTGGTTTCTGATTATTGCAAGGCAAG 999
Query 1015 -CGAGATAGTGCTCTAAAGAGCAAAGAGAA-GATTACTGTCAAGAATGAGATGAATCCAG 1072
||||||||| ||||||||||||||||||| | |||| || | | | || |||||
Sbjct 1000 TCGAGATAGTTCTCTAAAGAGCAAAGAGAATG-TTAC--TC-----TCA-A-GACTCCAG 1049
Query 1073 AAGAAGTCAAACAAAAGAAGGTTGATAAACGTTACTGGCTGAATCTTGATATAGAGGGGC 1132
||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||| |
Sbjct 1050 AAGAAGTCAAACAGAAGAAGGTTGAAAAACGTGAATGGCTGAATCTTGATATAGAGGGTC 1109
Query 1133 CGAATCAAGAGACCGACAGAGACTCTAATTTAAGATTACAGAATTTGGATTGGAGCCAAC 1192
|||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1110 CGAACCAAGAGACTGGCAGAGACTCTAATTTAAGCTTACAGAATTTGGATTGGAGCCAAC 1169
Query 1193 CTCAGCAGGCTAAATCTGCTCCGCACAGTTCAGTCTTACCTTTGCCAGTAGCTGTAGCCA 1252
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 1170 CTCAGCAGGCTAAATCTGCTCAGCATAGTTCAGTCTTACCTTTGCCAGTAGCTGTAGGCA 1229
Query 1253 GCTGGCCTAGCGGGGTTCCTCCTCAGGGACATGTAGCCCTGATCCAGACCGGTAAACCTG 1312
||| |||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct 1230 GCTCGCCTAGCGTGGTTCCTCCTCGGGGATATGTACCCCTGATCCAGACCGGTAAACCTG 1289
Query 1313 TGGATGAAAGCAATGGATCTTCTAAATTAGTGCAGGGTGCTCCAATT-TCTGCCTCTCAG 1371
|||||| |||||||||||||||| || |||||||||||| | ||| ||||||||||||
Sbjct 1290 TGGATGGGAGCAATGGATCTTCTACTTTGGTGCAGGGTGCT-CTATTCTCTGCCTCTCAG 1348
Query 1372 CCTAGGCCTAAAAGGTGTGCCACACACTTTTTCATAGCTCGGAACATTCAGCTACATCAG 1431
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1349 CCTAGGCCTAAAAGGTGTGCCACACACTTTTTCATTGCTCGGAACATTCAGCTACATCAG 1408
Query 1432 CATTTCCTCAAAACAAACCATCTCCCTACACCAAACAAAGGTTCTGTTTATCTGAAAGGT 1491
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1409 CATTTCGTCAAAACAAACCATCTCTCTACACCAAACAAAGGTTCTGTTTATCTGAAAGGT 1468
Query 1492 GGTGACTTGAGGCCAACCGCTGGAAACCCATCCTTGCATGGAAGCTCTCCTATTCTCAGT 1551
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1469 GGTGACTTGAGGCCAGCCGCTGGAAACCCATCCTTGCAAGGAAGCTCTCCTATTCTCAGT 1528
Query 1552 TTAAACTCCCAACCACACGTTAGAAACGGAGATAATATTTCTGCGCCTAATGTTAAAGCC 1611
||||||||||| |||||| ||||| || |||||||||||||| || ||| | |||||||
Sbjct 1529 TTAAACTCCCAGGCACACGATAGAATCGTAGATAATATTTCTGTGCTTAAGGATAAAGCC 1588
Query 1612 TCTGAAAGTGGTCATTTTGCCTCAACCAGACAGAATAAACCTCAACCACCCCCTGCATCA 1671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 TCTGAAAGTGGTCATTTTGCCTCAACCAGACAGAATAAACCTCAACCACCCCCTGCATCG 1648
Query 1672 ATTAGTGTAGTGCCTGCTCCAGCTTTTATCTACCCCGCAAACCACCATTTGCAACCAGTC 1731
|||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||
Sbjct 1649 ATTAGTGTAGTGCCTGCTCCTGCTTTCATCTTCCCCGCAAACCACCAATTGCAACCAGTC 1708
Query 1732 ATGGTACCTTCTAAATCATCTCGCCCAACCAAGAGCCCCCATTTGGCTGTTGGTTTAGCA 1791
||||||||||||||||| ||||||||||| |||||||| | | |||||||||||| ||||
Sbjct 1709 ATGGTACCTTCTAAATCTTCTCGCCCAACAAAGAGCCCACGTGTGGCTGTTGGTTCAGCA 1768
Query 1792 TCTGCTAACTTCAGCCATCCAAGTTCATCAGCCAGCGAAGTTTCTTCTCCATACTTAACA 1851
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1769 TCTGTTAACTTCACCCATCCAAGTTCATCAGCCAGCGAAGTTTCTTCTCCATACTTTACA 1828
Query 1852 GTTATTCCAAACAATGCATATTCCTTTCAACTGTCATCAACCATCAGAGGTGGGACTCCA 1911
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 GTTCTTCCAAACAATGCATATTCCTTTCAACTGTCATCAACCATCAGAGGTGGGACTCCA 1888
Query 1912 AGCCAGGCGGTGCCTTTCTACAATGGGTCTTTTTACTCGCCTCAGATGTTCCAACAACCT 1971
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1889 AGCCAGGCGGTGCCTTTCTACAATGGGTCTTTTTACTCGCCGCAGATGTTCCAACAACAT 1948
Query 1972 CCTCAGCCTCTGCAGAGACAGAGTCAAGCCCAGAGGGAGTCAAAGGCATCAAGCTGTTCC 2031
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1949 CCTCAACCTCTGCAGAGACAGAGTCAAGCCCAAAGGGAGTCAAAGGCATCAAGCTGTTCC 2008
Query 2032 TCATC-TTCC-CA--C-A--G-----GCAACCGCAAGTTAGTGTGAATAGTCTTTCAAGC 2079
||||| | || || | | | ||||||||||||||||||||||||||||||||||
Sbjct 2009 TCATCATCCCACAGGCAACCGCAACCGCAACCGCAAGTTAGTGTGAATAGTCTTTCAAGC 2068
Query 2080 CAAGCTAATGTTCAGCAACACCGTCAAATGTCACAAAAGTTTGAGG-T-----AGCTGGA 2133
|||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||
Sbjct 2069 CAAGCTAATGTTCAACAACACCGTCAAATGTCACAAAAGTCTGAGGCTAAAGCAGCTGGA 2128
Query 2134 GTTAACACTGATTCAAGGGGTAGCCACACTCAGAAAGGAGGCCCATTTGGCCAGATCATG 2193
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2129 GATAACACTGATTCAAGGGGTAGCCACACTCAGAAAGGAGGCCCATTTAGCCAGATCATG 2188
Query 2194 GCAGCCCCTGTTCAGCCACAAAACTTTTCCATGTCGTTTGCGTCTATCGCCAGCAGTGCT 2253
|||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2189 ACAGCGCCTGTTCAACCACAAAACTTTTCCATGTCGTTTGCGTCTTTCGCCAACAGTGCT 2248
Query 2254 CCCCCTGCAACTCTGAATTTTTCCTCCAATGGCTAT--CA-CATCTCTACACCTCCTGGT 2310
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 2249 GCCCCTGCAACTCTGAATTTCTCCTCCAATGGCTATCACATCATCTCTACACCTCCTGGT 2308
Query 2311 GTTGCTCACCAGAAAAACCATCAATCAAGTGAGGCAAAGACTGGAGGTGGAAGCTGTTCA 2370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2309 GTTGCTCACCAGAAAAACCATCAATCAAGTGAGGCAAAGACTGGAGGTGGAAGCTGTTCA 2368
Query 2371 AGCAATGCCGAAGACCCGAAAAAGAATCTTCAAGGGAAGCCTCAAGGGATGATGAATGGA 2430
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2369 AGCAATGCCGAAGACCCGAAAAAGAATCTTCCAGGGAAGCCTCCAGGGATGATGAATGGA 2428
Query 2431 CATACGCTGGTTTTTGACAATCCATCGAGAACCCTCAACTTTGTTTCTGGTACTTGGCCT 2490
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429 CAGACACTGGTTTTTGACAATCCATCGAGAACCCTCAACTTTGTTTCTGGTACTTGGCCT 2488
Query 2491 CCTCCTGCAGCAACAGCAATAAACGGAGACCCTTCAGTGTTTACGCAGCATCTCACGCAG 2550
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 2489 CCTCCTGCAGCAACAGCAATAAATGGAGACCCTTCAGTGTTTACCCAGCATCTTACGCAG 2548
Query 2551 AGGCAGCAGCAATCTGGTCGGAGTAAAATGATGATGACTCATTCGCAGGCTGACTCTGTT 2610
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2549 AGACAGCAGCAATCTGGTCGGAGTAAAATGATGA---CTCATTCGCAGGCTGACTCTGTT 2605
Query 2611 TCTGCCACGTCATCCCAGTGGAAAAACCCTGCAACCTCATCATCACTCACGTC-GTGTAC 2669
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 2606 TCTGCCCCGTCATCCCAGTGGAAAAACCCTGCAACCTCATCGTCACTCACGTCCG-GTAC 2664
Query 2670 TTCCTTAAACCTCAAGCAGTTCCAGTCGCAGCAGCAGATCAGAACACACGGACAGACACA 2729
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2665 TTCCTTAAACCTCAAGCAGTTCCAGTCGCAGCAGCAGACCAGAACACACGGACAGACACA 2724
Query 2730 GATTTCTTTTGCAGCACCAACAAATCCGCAGCCTTCTCAGGGGAAACAGGGGAGATCTGG 2789
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2725 GATTTCTTTTGCAGCACCATCAAATCCGCAGCCTTCTCAGGGGAAACAGGGGAGATCTGG 2784
Query 2790 TGGCTCTTCTCCTTCAGTCACTGGGTCTGCTTCACATGGCAAACCAGCGAACTCTAAGGT 2849
|||||||||| ||||||||||||||| |||||||||||||||| | || ||| |||||||
Sbjct 2785 TGGCTCTTCTTCTTCAGTCACTGGGTATGCTTCACATGGCAAAGCTGCAAACCCTAAGGT 2844
Query 2850 CAGCAATAGCAAAGCCTTGCTATTATCACCTGTTCCTTTGTCACAGGAACACACAGAGAA 2909
|||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 2845 CAGCAATAGCAAAGCCTTGCCATTATCACCTGTTCCTTTGTCACGGGAACAGACAGAGAA 2904
Query 2910 TCCAGCTTCCGGGTCGACCCaaaaaaaCTCTCCCGTTTGTGGAAGGACCGTGCCACCGAT 2969
| |||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2905 TTCAGCGTCCGGGTCGTCCCAGAAAACCTCTCCCGTTTGTGGAAGGACCGTGCCACCGAT 2964
Query 2970 TATAACTTCGTGCCCTGGTCATCTGTCCGAGCTTAAGTACTAGTTCCA-TCGAAGCAGAC 3028
||||||||||||||| ||||||||||| ||||| |||||||||||||| | |||||||||
Sbjct 2965 TATAACTTCGTGCCCGGGTCATCTGTCTGAGCTAAAGTACTAGTTCCAATTGAAGCAGAC 3024
Query 3029 GTATGAAGCCACCATTTTTGCAGTGTCTAGCTTCGAATTTAGGCTATTCCTAGATGAGGT 3088
|| ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 3025 GTTTGAAGCCACCATTTTTGCAGTGTCTTGCTTCGAAATTAGGCAATTCCTAGATGAGGT 3084
Query 3089 AATACCCTAATGGTTAGTGAAAGTAC-C-TCTTCTC-T-----AGGGAGTGAACGCTTT- 3139
|||||||||||||||||| ||||||| | ||||||| | | ||||||||||||||
Sbjct 3085 AATACCCTAATGGTTAGTAAAAGTACACCTCTTCTCCTTCTCTACGGAGTGAACGCTTTC 3144
Query 3140 GGATCGGTATCTAAATTGTTTTATGTT--ATGGGGTCGATTGTTCTATCATTATGATTGG 3197
|| || ||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 3145 GG-TCAGTATCTAAATTGTTTAATGTTTTATGGGGTCGATTGTTCTATCATTATGATTGG 3203
Query 3198 TCTGGTAGACTCTAGTGTAGATATTTAGACTAACAAAACCC 3238
||| |||| ||||||||||||||||||||||||||||||
Sbjct 3204 TCT---AGACACTAGTGTAGATATTTAGACTAACAAAACCC 3241
Score = 928 bits (502), Expect = 0.0
Identities = 617/668 (92%), Gaps = 25/668 (4%)
Strand=Plus/Plus
Query 65 AGCTTGCATTAATGGATAAACCCAGGGAAGCTCGAAGATCAACGACAAACATGGCTGCAT 124
|||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |
Sbjct 48 AGCTTGCATTAATGGATAAAACCAGAGAAGCTCGAAGATCAACGACAACCATGGCTGCTT 107
Query 125 CAAACGGAGTTACTAAACGGAGGCAGAGAATCTCAGAAAACAGTCGTGAGCAGATGCATC 184
|||| ||||| || |||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 108 CAAATGGAGTAACAAAACGGAGAAAGAGACTCTCAGAAAATAGTCGTGAGCAGATGCATC 167
Query 185 AGGAGGTGGCGACGGTGAGAGATCGACCGGGGAAGAAAGAGCGAGATCCGGAATCGTTCA 244
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 168 AGGAGGTGGCGACTGTGAGAGATCGACCAGGGAAGAAAGAGCGAGATCCGGAATCGTTCA 227
Query 245 ATCGGAGTAAGAGGAGAAGAAGCGAGAGGTTCGCGCCGAGGAACGAGAGAGATGTGGAAG 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ATCGGAGTAAGAGGAGACGAAGCGAGAGGTTCGCGCCGAGGAACGAGAGAGATGTGGAAG 287
Query 305 AAGATAGCTCGGATGAGAGTCAAGGAGACGACGAT-T--A------TCATCAGAGGAAGA 355
||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 288 AAGATAGCTCGGATGAGAGTCAAGGAGACGACGATGTTCAGCAAAATCATCAGAGGAAGA 347
Query 356 GCTTCTCGTCGGGTCGAATCCCCAGGCATGCGGCGTCTTTGATGGTCGCCGATGAAATGA 415
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 348 GCTTCCCGTCGGGTCGAATCCCCAGGCATGCGGCGTCTTTGAAGGTCACCGATGAAATGA 407
Query 416 TCGGCGTACCTGTCCCGAGAAAGGCTCGCTCAGCATGTTTAAAGAGGTCGCATGACTGCC 475
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 408 TCGGCGTAGCTGTCCCGAGAAAGGCTCGCTCAGCATGTATAAAGAGGTCGCATGACTGCC 467
Query 476 GGACTTCGTCGGGAAGCCATAGCTGCGAAGTCGTTTCACCGTCTTCTTCAACTCTTTCCG 535
||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 468 GGACTTCGTCGGGAAGC----G-T------T-GTTTCACCGTCTTCTTCAACTCTTTCCG 515
Query 536 TCAAAG-AGA-GAAAGATTGTAAACGGATCCAAATCCCGGATACCCAAACCACCGAAATC 593
|||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TCAA-GCAGAAGAA-GATTGTAAACGGATCCAAATCCCGGATACCCAAACCACCGAAATC 573
Query 594 CTCCGGCACGGTTGAGGACGACTTGGAGATCGAAATAGCAGAGGTTCTCTCCGGATTGAA 653
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 574 CTCCGGCACGGTTGAGGACGACTTGGAGATCGAAATAGCAGAGGTGCTCTCCGGATTGAA 633
Query 654 AAAGCAGCCTCATAGCTCAAAGAGAGGAGACGATTCGGAGAATTCTCAAAAATCATCGGA 713
||||||||||| |||||| |||||||||||| ||||||||||||| ||||| ||||| ||
Sbjct 634 AAAGCAGCCTCGTAGCTCTAAGAGAGGAGACCATTCGGAGAATTCCCAAAAGTCATCCGA 693
Query 714 GGTTAAAG 721
||||||||
Sbjct 694 GGTTAAAG 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122202866903
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5