BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63200.1
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939416 jgi|Araly1|939416|scaffold_503607.1 1895 0.0
> Ahg939416 jgi|Araly1|939416|scaffold_503607.1
Length=1195
Score = 1895 bits (1026), Expect = 0.0
Identities = 1131/1183 (96%), Gaps = 2/1183 (0%)
Strand=Plus/Plus
Query 221 TAATTTTGTTCTTTTCTTATGGAGATGGATCTCAGCAAGGTTACTCTTGACATTTTCACA 280
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TAATTTTGTTTTTTTCTTATGGAGATGGATCTCAGCAAGGTTACTCTTGACATTTTCACA 62
Query 281 AAGCTTGAACAGAAATGGCTCTCTCACTGCGACTCCTCCCGGAAGACTCGTATCCTTAGC 340
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 63 AAGCTTGAACAGAAATGGCTCTCTCACTGCGACACCTCCAGGAAGACTCGTATCCTTAGC 122
Query 341 ATCGACGGTGGCGGTACCACTGGCATTGTCGCCGCTGCTTCTATTCTCCACCTCGAGCAC 400
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 123 ATCGACGGTGGCGGTACCACTGCCATTGTCGCCGCTGCTTTTATTCTCCACCTCGAACAC 182
Query 401 CAGATCCGCCTTCAAACCGGCGACCCTCACGCTCACATCTCTGATTTCTTCGACATTGTC 460
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 183 CAGATCCGCCTTCTAACCGGTGACCCTCTCGCTCACATCTCTGATTTCTTCGACATTGTC 242
Query 461 GCCGGAACTGGCATCGGAGGCATTCTCGCCGCCCTCCTTGTCGCCGACGACGGCTCCGGC 520
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 243 GCCGGAACTGGCATCGGGGGCATTCTCGCCGCCCTCCTTGTTGCCGACGACGGCTCCGGC 302
Query 521 AGGCCGATGTTCACTGCCAGAGACGCGGTTAAGTTTGTCGCGGAGAAGAACTCGGAGCTC 580
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 303 AGGCCGATGTTCACTGCCAGAGACGCGGTTCAGTTTGTCACGGAGAAGAACTCGGAGCTC 362
Query 581 TTCGAGATCAGGTACACCGGAGTTTTCAGGAGGAACAAGAGATACTCGGGGAAGAGCATG 640
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 363 TTCGAGATCAGGTACACCGGCGTTTTCAGGAGGAACAAGAGGTACTCGGGGAAGAGCATG 422
Query 641 GAGAGGGTTTTGGAGACGGCGTTTAGGAGAGAGGACGGTAAGGTGTTGACGATGAAGGAC 700
|||||||| |||||| | |||||| |||| || |||||||||||||||||||||||||||
Sbjct 423 GAGAGGGTGTTGGAGGCTGCGTTTCGGAGGGAAGACGGTAAGGTGTTGACGATGAAGGAC 482
Query 701 ACGTGTAAGCCTCTCCTTGTTCCTTGCTACGACCTCAAAACCTCTGCTCCTTTCGTTTTC 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ACGTGTAAGCCTCTCCTTGTTCCTTGCTACGACCTCAAAACCTCTGCTCCTTTCGTTTTC 542
Query 761 TCACGCGCCGGCGCGTCTGAGTCTCCGAGCTTCGACTTCGAGCTGTGGAAAGTCTGCCGT 820
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 543 TCACGCGCCGGCGCGTCTGAGTCCCCGAGCTTCGACTTCGAGCTGTGGAAAGTCTGCCGT 602
Query 821 GCCACGTCAGCAACACCAAGCCTCTTCAAGCCGTTCAGTGTAGTGTCGGTGGACGGGAAA 880
|||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 603 GCCACGTCGGCAACACCTAGCCTCTTCAAGCCGTTCAATGTGGTGTCGGTGGACGGGAAA 662
Query 881 ACCTCATGCTCAGCCGTAGACGGCGGTTTGGTGATGAACAATCCAACAGCAGCTGCCGTC 940
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ACCTCATGCTCAGCCGTAGACGGCGGTTTGGTGATGAACAATCCAACAGCAGCTGCCGTG 722
Query 941 ACGCACGTGCTACACAACAAACGAGATTTCCCGTCAGTAAACGGCGTAGATGACTTGCTT 1000
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 723 ACGCACGTGCTCCACAACAAACGAGATTTCCCGTCAGTTAACGGCGTGGATGACTTGCTT 782
Query 1001 GTACTGTCGTT-GGGAAACGGTCCGTCGACCATGTCATCATCACCAGGGAGGAAACTCCG 1059
||||||||| | ||||| |||| | ||||||||| |||| ||||||||||||||||||||
Sbjct 783 GTACTGTCGCTAGGGAA-CGGTTCATCGACCATGGCATCTTCACCAGGGAGGAAACTCCG 841
Query 1060 TCGTAACGGAGACTATTCAACGTCAAGTGTGGTGGACATAGTGGTTGACGGCGTTTCCGA 1119
|||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||||||
Sbjct 842 TCGTAACGGAGACTGTTCAACGTCATGTGTGGTGGATATAGTGCTTGACGGCGTTTCCGA 901
Query 1120 TACCGTCGATCAGATGCTGGGGAACGCTTTCTGCTGGAACCGTACTGATTACGTTAGAAT 1179
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 902 TACCGTTGATCAGATGCTGGGGAACGCTTTCTGCTGGAACCGTACCGATTACGTTAGAAT 961
Query 1180 CCAGGCGAACGGTTTGACGAGCGGCGGAGCGGAGGAGTTGCTGAAAGAGAGAGGTGTGGA 1239
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 962 CCAGGCGAACGGTTTGACGAGCGGCGGAGCGGCCGAGTTGCTGAAAGAGAGAGGTGTGGA 1021
Query 1240 AACGGCGCCGTTTGGGGTAAAACGGATACTAACGGAGAGTAACGGAGAAAGAATAGAGGG 1299
||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 1022 AACGGCGCCGTTTGGGGTAAAACGGTTACTAACGGAGAGTAACGGAGCAAGAATCGAGGG 1081
Query 1300 TTTCGTGCAACGTCTTGTTGCGTCAGGAAAGTCAAGTCTACCTCCAAGTCCTTGCAAGGA 1359
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TTTCGTGCAGCGCCTTGTTGCTTCAGGAAAGTCAAGTCTACCTCCAAGTCCTTGCAAGGA 1141
Query 1360 ATCTGCCGTTAACCCTCTCGCTGACGGCCGTTAAGTTTCCTTT 1402
||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1142 ATCTGCCGTTAACCCTCTCGCTGACGGCCGTTAAGTTCCCTTT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59116060240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5