BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63210.1
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324745 jgi|Araly1|324745|fgenesh1_pm.C_scaffold_5002289 1099 0.0
Ahg948553 jgi|Araly1|948553|scaffold_800440.1 387 2e-106
> Ahg324745 jgi|Araly1|324745|fgenesh1_pm.C_scaffold_5002289
Length=801
Score = 1099 bits (595), Expect = 0.0
Identities = 743/810 (92%), Gaps = 27/810 (3%)
Strand=Plus/Plus
Query 255 ATGCTTAGAAACAAACCTAGAGCAGCCGTGACGACTAAGAAACAAACATCTCTGTTAATG 314
||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||
Sbjct 1 ATGCTTAGAAACAAACCTAGAGCTGCCGTGAC--C-AAGAAACAAACATCTCTATTAATG 57
Query 315 GCTGATCAACCTCCA-CCTCCAAAGCCTAACACTTGCCACTGCTCACCATCTCTCTTTAG 373
||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 58 GCTGATCAACCCCCACCCT-CAAAGCCTAACACTTGCCACTGCTCATCATCTCTCTTTAG 116
Query 374 CTCTCCCAAGTTTAGGTTTTTCACTTCTAAGATGATGATG-ACTCCCTTTGACTCTGATT 432
|||||| |||||||||||||||||||| |||||||||| | ||||| |||||||||||||
Sbjct 117 CTCTCCAAAGTTTAGGTTTTTCACTTCAAAGATGATGA-GTACTCCTTTTGACTCTGATT 175
Query 433 TCTCACTCGTTAGCCCTACGTCTATACTCGAAGCTAACCCATCCATCTTCTCCTCCAAAA 492
|||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 176 TCTCCCTCGTCAGCCCTACGTCGATCCTCGAAGCTAACCCATCCATCTTCTCCTCCAAAA 235
Query 493 ACCCTAAACCCGTTTCCTATTTCGAGCCAACTATCCCTAATCCCCAGCGTTTTCACTCTC 552
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 236 TCCCTAAACCCGTTTCCTATTTCGAGCCCACTATCCCTAATCCCCAACGTTTTCACACAG 295
Query 553 CAGACGTCTTTGGCCTAGCCGATCTCGTGAAAG-ACGGAGACAGTAACAGAGACCACTCT 611
|||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 296 CAGACGTCTTTGGCCTCGCCGATCTCGT-CAAGTACGCAGACAGTAACAGAGACCACTCG 354
Query 612 AGAAAACCTGTCAACAAGATGGTCCTTTTCGGGTCAAAGCTCAGAGTCCAGATCCCATCA 671
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 355 AGGAAACCTGTCAACAAGATGGTCCTTTTCGGGTCGAAGCTCAGAGTCCAGATCCCATCA 414
Query 672 TCAGCTGATTTTGGAACTAAAACCGGCATCAGATATCCTCCT--TGT-CA---ACT--T- 722
|||||||||||||||||||||||||| ||||||||| || || || || |
Sbjct 415 ---GCTGATTTTGGAACTAAAACCGGCATGAGATATCCTGCTCATGGACAGGGACAACTC 471
Query 723 AGTCCTTGTGTCCAAACGAAGGTCTTAGCAGTGAGCGAGATTGACCAGACGGAGGACTAC 782
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 472 AGTCCTTGTGTCCAAACGAAGGTCTTAGCCGTGAGCGAGATTGACCACACGGAGGACTAC 531
Query 783 ACGCGCGTCATCTCTCACGGTCCTAACCCAACCATCACTCATATCTTCGACAACTCTGTT 842
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 532 ACGCGCGTCATATCCCACGGTCCAAACCCAACCATCACTCATATCTTCGACAACTCTGTT 591
Query 843 TTCGTGGAGGCTACTCCTT---GCTCTGTTCCTTTAC-CCCA--ACCAGCCATGGAGACC 896
||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||
Sbjct 592 TTCGTGGAGGCTACTCCTTTTTGCGCTGTTCCTTTACACCCACCACCAGCCATGGAGACC 651
Query 897 AAGAGCACCGAGAGTTTTCTAAGCCGTTGCTTCACCTGCAAGAAGAATCTTGACCAGAAA 956
||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 652 AAGCGCACGGAGAGTTTTCTAAGCTATTGCTACACCTGCAAGAAGAATCTTGACCAGAAA 711
Query 957 CAGGACATCTACATATACAGGGGAGAGAAAGGTTTTTGCAGCAGCGAGTGCAGGTACCAG 1016
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 712 CAGGACATCTATATATACAGAGGAGAGAAAGGTTTTTGCAGCAGCGAGTGCAGGTACCAG 771
Query 1017 GAGATGCTTCTTGATCAAATGGAGACCTAG 1046
||||||||||||||||||||||||||||||
Sbjct 772 GAGATGCTTCTTGATCAAATGGAGACCTAG 801
> Ahg948553 jgi|Araly1|948553|scaffold_800440.1
Length=476
Score = 387 bits (209), Expect = 2e-106
Identities = 291/329 (88%), Gaps = 12/329 (4%)
Strand=Plus/Plus
Query 383 GTTTAGGTTTTTCACTTCTAAGATGATGATGACTCCCTTTGACTCTGATTTCTCACTCGT 442
||||||| |||||||||| | | |||||||||| ||||||||||||||||| |||||
Sbjct 1 GTTTAGGGTTTTCACTTC--A-A-GATGATGACTTATTTTGACTCTGATTTCTCCCTCGT 56
Query 443 TAGCCCTACGTCTATACTCGAAGCTAACCCATCCATCTTCTCCTCCAAAAACCCTAAACC 502
||||||||||| || || |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 57 CAGCCCTACGTCGATCCTAGAAGCTAACCCATCAATCTTCTCCTCCAAATACCCTAAACC 116
Query 503 CGTTTCCTATTTCGAGCCAACTATCCCTAATCCCCAGCGTTTTCACTCTCCAGACGTCTT 562
|||||||||||||||||| | |||| |||||||||| ||||||||| | |||||||||||
Sbjct 117 CGTTTCCTATTTCGAGCCCAGTATCTCTAATCCCCAACGTTTTCACACACCAGACGTCTT 176
Query 563 TGGCCTAGCCGATCTCGTGAAAGACGGAGACAGTAACAGAGACCACTCTAGAAAACCTGT 622
|||||| ||||||||||| | | ||||||||||||||||||||||||| ||||| |||||
Sbjct 177 TGGCCTCGCCGATCTCGTCATATACGGAGACAGTAACAGAGACCACTCGAGAAA-CCTGT 235
Query 623 CAAC--A-A-GATGGTCCTTTTCGGGTCAAAGCTCAGAGTCCAGATCCCATCATCAGCTG 678
|||| | | |||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 236 CAACGTACAAGATGGTCCTTTTCGGGTCGAAGCTCAGAGTCCAGATCCCATCAG-A--TG 292
Query 679 ATTTTGGAACTAAAACCGGCATCAGATAT 707
||||||||||||||||||| || ||||||
Sbjct 293 ATTTTGGAACTAAAACCGGTATGAGATAT 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54240508880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5