BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63210.1 Length=1450 Score E Sequences producing significant alignments: (Bits) Value Ahg324745 jgi|Araly1|324745|fgenesh1_pm.C_scaffold_5002289 1099 0.0 Ahg948553 jgi|Araly1|948553|scaffold_800440.1 387 2e-106 > Ahg324745 jgi|Araly1|324745|fgenesh1_pm.C_scaffold_5002289 Length=801 Score = 1099 bits (595), Expect = 0.0 Identities = 743/810 (92%), Gaps = 27/810 (3%) Strand=Plus/Plus Query 255 ATGCTTAGAAACAAACCTAGAGCAGCCGTGACGACTAAGAAACAAACATCTCTGTTAATG 314 ||||||||||||||||||||||| |||||||| | ||||||||||||||||| |||||| Sbjct 1 ATGCTTAGAAACAAACCTAGAGCTGCCGTGAC--C-AAGAAACAAACATCTCTATTAATG 57 Query 315 GCTGATCAACCTCCA-CCTCCAAAGCCTAACACTTGCCACTGCTCACCATCTCTCTTTAG 373 ||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 58 GCTGATCAACCCCCACCCT-CAAAGCCTAACACTTGCCACTGCTCATCATCTCTCTTTAG 116 Query 374 CTCTCCCAAGTTTAGGTTTTTCACTTCTAAGATGATGATG-ACTCCCTTTGACTCTGATT 432 |||||| |||||||||||||||||||| |||||||||| | ||||| ||||||||||||| Sbjct 117 CTCTCCAAAGTTTAGGTTTTTCACTTCAAAGATGATGA-GTACTCCTTTTGACTCTGATT 175 Query 433 TCTCACTCGTTAGCCCTACGTCTATACTCGAAGCTAACCCATCCATCTTCTCCTCCAAAA 492 |||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 176 TCTCCCTCGTCAGCCCTACGTCGATCCTCGAAGCTAACCCATCCATCTTCTCCTCCAAAA 235 Query 493 ACCCTAAACCCGTTTCCTATTTCGAGCCAACTATCCCTAATCCCCAGCGTTTTCACTCTC 552 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | Sbjct 236 TCCCTAAACCCGTTTCCTATTTCGAGCCCACTATCCCTAATCCCCAACGTTTTCACACAG 295 Query 553 CAGACGTCTTTGGCCTAGCCGATCTCGTGAAAG-ACGGAGACAGTAACAGAGACCACTCT 611 |||||||||||||||| ||||||||||| ||| ||| ||||||||||||||||||||| Sbjct 296 CAGACGTCTTTGGCCTCGCCGATCTCGT-CAAGTACGCAGACAGTAACAGAGACCACTCG 354 Query 612 AGAAAACCTGTCAACAAGATGGTCCTTTTCGGGTCAAAGCTCAGAGTCCAGATCCCATCA 671 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 355 AGGAAACCTGTCAACAAGATGGTCCTTTTCGGGTCGAAGCTCAGAGTCCAGATCCCATCA 414 Query 672 TCAGCTGATTTTGGAACTAAAACCGGCATCAGATATCCTCCT--TGT-CA---ACT--T- 722 |||||||||||||||||||||||||| ||||||||| || || || || | Sbjct 415 ---GCTGATTTTGGAACTAAAACCGGCATGAGATATCCTGCTCATGGACAGGGACAACTC 471 Query 723 AGTCCTTGTGTCCAAACGAAGGTCTTAGCAGTGAGCGAGATTGACCAGACGGAGGACTAC 782 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 472 AGTCCTTGTGTCCAAACGAAGGTCTTAGCCGTGAGCGAGATTGACCACACGGAGGACTAC 531 Query 783 ACGCGCGTCATCTCTCACGGTCCTAACCCAACCATCACTCATATCTTCGACAACTCTGTT 842 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 532 ACGCGCGTCATATCCCACGGTCCAAACCCAACCATCACTCATATCTTCGACAACTCTGTT 591 Query 843 TTCGTGGAGGCTACTCCTT---GCTCTGTTCCTTTAC-CCCA--ACCAGCCATGGAGACC 896 ||||||||||||||||||| || |||||||||||| |||| |||||||||||||||| Sbjct 592 TTCGTGGAGGCTACTCCTTTTTGCGCTGTTCCTTTACACCCACCACCAGCCATGGAGACC 651 Query 897 AAGAGCACCGAGAGTTTTCTAAGCCGTTGCTTCACCTGCAAGAAGAATCTTGACCAGAAA 956 ||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 652 AAGCGCACGGAGAGTTTTCTAAGCTATTGCTACACCTGCAAGAAGAATCTTGACCAGAAA 711 Query 957 CAGGACATCTACATATACAGGGGAGAGAAAGGTTTTTGCAGCAGCGAGTGCAGGTACCAG 1016 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 712 CAGGACATCTATATATACAGAGGAGAGAAAGGTTTTTGCAGCAGCGAGTGCAGGTACCAG 771 Query 1017 GAGATGCTTCTTGATCAAATGGAGACCTAG 1046 |||||||||||||||||||||||||||||| Sbjct 772 GAGATGCTTCTTGATCAAATGGAGACCTAG 801 > Ahg948553 jgi|Araly1|948553|scaffold_800440.1 Length=476 Score = 387 bits (209), Expect = 2e-106 Identities = 291/329 (88%), Gaps = 12/329 (4%) Strand=Plus/Plus Query 383 GTTTAGGTTTTTCACTTCTAAGATGATGATGACTCCCTTTGACTCTGATTTCTCACTCGT 442 ||||||| |||||||||| | | |||||||||| ||||||||||||||||| ||||| Sbjct 1 GTTTAGGGTTTTCACTTC--A-A-GATGATGACTTATTTTGACTCTGATTTCTCCCTCGT 56 Query 443 TAGCCCTACGTCTATACTCGAAGCTAACCCATCCATCTTCTCCTCCAAAAACCCTAAACC 502 ||||||||||| || || |||||||||||||| ||||||||||||||| |||||||||| Sbjct 57 CAGCCCTACGTCGATCCTAGAAGCTAACCCATCAATCTTCTCCTCCAAATACCCTAAACC 116 Query 503 CGTTTCCTATTTCGAGCCAACTATCCCTAATCCCCAGCGTTTTCACTCTCCAGACGTCTT 562 |||||||||||||||||| | |||| |||||||||| ||||||||| | ||||||||||| Sbjct 117 CGTTTCCTATTTCGAGCCCAGTATCTCTAATCCCCAACGTTTTCACACACCAGACGTCTT 176 Query 563 TGGCCTAGCCGATCTCGTGAAAGACGGAGACAGTAACAGAGACCACTCTAGAAAACCTGT 622 |||||| ||||||||||| | | ||||||||||||||||||||||||| ||||| ||||| Sbjct 177 TGGCCTCGCCGATCTCGTCATATACGGAGACAGTAACAGAGACCACTCGAGAAA-CCTGT 235 Query 623 CAAC--A-A-GATGGTCCTTTTCGGGTCAAAGCTCAGAGTCCAGATCCCATCATCAGCTG 678 |||| | | |||||||||||||||||| |||||||||||||||||||||||| | || Sbjct 236 CAACGTACAAGATGGTCCTTTTCGGGTCGAAGCTCAGAGTCCAGATCCCATCAG-A--TG 292 Query 679 ATTTTGGAACTAAAACCGGCATCAGATAT 707 ||||||||||||||||||| || |||||| Sbjct 293 ATTTTGGAACTAAAACCGGTATGAGATAT 321 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54240508880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5