BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63220.2
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939419 jgi|Araly1|939419|scaffold_503610.1 1509 0.0
> Ahg939419 jgi|Araly1|939419|scaffold_503610.1
Length=1081
Score = 1509 bits (817), Expect = 0.0
Identities = 985/1066 (92%), Gaps = 12/1066 (1%)
Strand=Plus/Plus
Query 568 AACAATGTCTGGGCTGCTGGATGGAATCCCCGAAGCAGTGGCTCTGAGATGCCTGGCTCA 627
||||||||||||||||||||| | || || || |||||||||||||||||||| |||||
Sbjct 19 AACAATGTCTGGGCTGCTGGAAAGTATTCCAGACGCAGTGGCTCTGAGATGCCTCGCTCA 78
Query 628 TGTGCCTTTACACCTTCATCCCAATTTAGAACTCGTCTCTCGCTCCTGGCGAGCTGCTAT 687
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 79 TGTGCCTTTACACCTTCATCCCAATTTAGAACTCGTGTCTCGCTCCTGGCGAGCAGCTAT 138
Query 688 CCGCAGT-CATGAGCTCTTCAGAGTCCGTAAAGAGCTCCGATCTTCTGAGCATCTCCTCT 746
||||||| | |||||||||| |||||||| ||||| |||| || ||||||||||||||||
Sbjct 139 CCGCAGTGC-TGAGCTCTTCCGAGTCCGTCAAGAGGTCCGCTCATCTGAGCATCTCCTCT 197
Query 747 GCGTCTGTGCTTTCGATCCTGAGAACATCTGGCAAGTCTACAGTCCCAACTGTGATCGCT 806
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 198 GCGTCTGTGCTTTCGACCCTGAGAACATCTGGCAAGTCTACAGTCCCAACTGCGATCGCT 257
Query 807 GGCTCACCCTCCCTCTCCTTCCTTCTC-GTATCCGCCACCTTGCCCATTTCGGTGCTGTC 865
||||||| ||||||||||||||||| | | ||||||||||||||||||||||| || |||
Sbjct 258 GGCTCACTCTCCCTCTCCTTCCTTC-CAGAATCCGCCACCTTGCCCATTTCGGGGCCGTC 316
Query 866 ACTACTGCCGGCATGCTCTTTGTCTTAGGCGGTGGCAGCGACGCTGTC-AGCCCTGTTAC 924
||||| ||||| | |||||||||||||||||| |||||||| |||||| | |||| | ||
Sbjct 317 ACTACCGCCGGGAAGCTCTTTGTCTTAGGCGGAGGCAGCGATGCTGTCAATCCCT-TGAC 375
Query 925 CGGGGATCACGACGGTACCTTTGCTACTGACCAGGTCTGGTCTTACGACTTTGTACAGAG 984
||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||
Sbjct 376 CGGGGATCACGACGGCACCTTTGCAACCGATGAGGTCTGGTCTTACGACTTTGTACAGAG 435
Query 985 ACAG-TGGACTCCTCGCGCTTCAATGCTCGTGCCTCGTGCTATGTTCGCCTGCTGCGTTC 1043
|| | |||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct 436 AC-GATGGACTCCTCTCGCATCAATGCTCTTGCCTCGTGCTATGTTCGCCTGTTGCGTTC 494
Query 1044 TTCAAGGGAAGATTGTTGTTGCTGGCGGATTCACCACTTGCAGGAAATCCATATCTGGAG 1103
|| |||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 495 TTGAAGGGAAGATTGTTGTTGCTGGTGGCTTCACGACTTGCAGGAAATCGATATCTGGAG 554
Query 1104 CGGAGATGTATGATCCTGAGAATGACGTCTGGACATCCATCCCAGATCTCCACCAGACTC 1163
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 555 CGGAGATGTATGATCCTGAGAATGACGTCTGGACATCCATCCCAGATCTCCACCGGACAC 614
Query 1164 ATAACTCTGCCTGCTCGGGTCTAGTGGTAAACGGGAAAGTCCACGTCTTGCACAAAGGCT 1223
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 615 ATAACTCTGCCTGCTCGGGTCTAGTGGTAAACGGGAAAGTTCACGTCTTGCACAAGGGCT 674
Query 1224 TGTCCACGGTGCAGGTTCTTGAGAGCGTTAAACTCGGGTGGGATGTCAAAGACTATGGCT 1283
| || |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 675 TATCGACGGTGCAGGTTCTTGAGAGCGTTAAACTCGGATGGGCTGTGAAAGACTATGGCT 734
Query 1284 GGCCGCAAGGTCCAATGGTGGTCGTTGAGGACGTGCTTTACGTGATGAGCCATGGGCTGG 1343
|||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||
Sbjct 735 GGCCGCAAGGTCCAATGGCGGTTGTGGAGGACGTGCTCTACGTGATGAGCCATGGGCTGG 794
Query 1344 TGTTCAAGCAAGAAGGTGACACGTGGAAGATGGTTGCATCGGCCTCAGAGTTTAAGCGGA 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TGTTCAAGCAAGAAGGTGACACGTGGAAGATGGTTGCATCGGCCTCAGAGTTTAAGCGGA 854
Query 1404 GGATCGGAATGGCGATGACGAGTTTGAGTGATGAGGTTTTGATCGTAGGAGGAGTGATCG 1463
|||| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 855 GGATTGGAATGGCCATGACGAGTTTGAGCGAAGAGGTTTTGATCGTAGGGGGAGTGATTG 914
Query 1464 GACCTGATAGGCTCAATTGGGACATCAAGCCCTTGTCAGATGTCGACGCTTTGACAGTTG 1523
|||||||||||||||| ||||||||||| || |||||||| ||||||| |||||||||||
Sbjct 915 GACCTGATAGGCTCAACTGGGACATCAAACCGTTGTCAGACGTCGACGTTTTGACAGTTG 974
Query 1524 GGAATGATCGTCCGGCCTGGAGGAGTGTGGCGCCGATGACAAGGTGTCGTGGGACGATCC 1583
|||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 975 GGAATGATCGTCCGGCGTGGCGGAGGGTGGCCCCGATGACAAGGTGTCGTGGGACGATCC 1034
Query 1584 TTGGCTGCACGCAGTTGACAATCTGATGGATGGGAATGTGGCTTCA 1629
||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1035 TTGGCTGCACGCAGTTGACAATCTGATGG--G--AATGTGGCTTCA 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5