BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63230.2
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349378 jgi|Araly1|349378|fgenesh1_pg.C_scaffold_5002770 359 1e-98
> Ahg349378 jgi|Araly1|349378|fgenesh1_pg.C_scaffold_5002770
Length=363
Score = 359 bits (194), Expect = 1e-98
Identities = 251/278 (90%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 11 TAATGATTCCGAGCAAGAGACCGCGAGCCCCAAGCTTCTCTGAGAAGCATCC--A-AAGT 67
||||| ||||||| |||||||||||||| ||||||||||| || |||||||| | |||
Sbjct 11 TAATGGTTCCGAGAAAGAGACCGCGAGCGCCAAGCTTCTCCGATAAGCATCCTGATGAGT 70
Query 68 ACGTAGGTTCTTCGGATTGGTTGCCGGCAGAGAAAGACAAGGCTCAAGTTCAGCTCACTA 127
|||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||
Sbjct 71 ACGTAGGTTCTTCGGATTGGTTGCCGGCCGAGAAAGACAAGGCTCAGGTTCAGGTCAATA 130
Query 128 ACTTCCTTGAGCTATGTCGTTTCTGCAAGAAGAATCTACGTCATGACGAGGACGTTTTCA 187
|||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 131 ACTTCCTTGAGCTATGCCGTTTCTGCAAGAAGAACCTGCGTCACGACGAGGACGTTTTCA 190
Query 188 TGTACGGATACTTGGGGGCATTCTGTTCAAAACAATGCAGAGCAAAACAGATGGCAT-GC 246
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 191 TGTACGGATACTTTGGGGCATTCTGTTCAAAACAATGCAGAGCAAAACAGATGGCGTTG- 249
Query 247 GACGTCTTTAGAGATTTCTCGAGACAGAAAGCAAATTG 284
||| ||||||| || ||| || |||||||||||| |||
Sbjct 250 GACATCTTTAGGGAATTCCCGCGACAGAAAGCAA-TTG 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16941081516
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5