BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63240.1
Length=2799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486827 jgi|Araly1|486827|fgenesh2_kg.5__2819__AT3G63240.1 2887 0.0
> Ahg486827 jgi|Araly1|486827|fgenesh2_kg.5__2819__AT3G63240.1
Length=2478
Score = 2887 bits (1563), Expect = 0.0
Identities = 1760/1852 (95%), Gaps = 26/1852 (1%)
Strand=Plus/Plus
Query 670 AATTGTGAATCAGAGATCTATCCATCTCTGTATGAAGCTGAAGAACAATGGGTGATGGTA 729
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 468 AATAGTGAATCAGAGATCTAGCCATCTCTGTATGAAGCTGAAGAACAATGGGTGATGGTA 527
Query 730 ACCTCAAGAAAAGCAAGCTGTCATGGCCCAAAACGTTGGTCAAGAAATGGCTCAACATCA 789
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GCCTCAAGAAAAGCAAGCTTTCATGGCCCAAAACGTTGGTCAAGAAATGGCTCAACATCA 587
Query 790 AGAGCAAATCAGAAGATTTTCACGCAGACGACTTGGACAGAGGTGAAGGTGGTGGAGATT 849
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 588 AGAGCAAATCAGAAGATTTTCACGCAGACGACTTGGACAGAGGTGAAGGTGGAGGAGATT 647
Query 850 GGAGGAACAATGTCATTGAAAGAGAGGAAGCATGCTCTGTCCGTAAAAGCAAAACTGAGA 909
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 648 GGAGGAACAATGTCATTGAAAGAGAGGAAGCATGCTCTGTCCACAAAAGCAAAACTGAGA 707
Query 910 CTCGGAGCAAAAGGAACAGCGGAAGAGCCAGACGAAACAAACTCGATGTCGATCCACCGC 969
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 708 CTCCGAGCAAAAGGAACAGCGGAAGAGCCAGACGAAACAAACTCGACGTCGATCCACCAC 767
Query 970 TTGATCATCTTAGGGTTTTTACTGCCACATGGAATGTCGCCGGCAAATCTCCGCCGAGTT 1029
||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 768 TTGATCATCATAGGGTTTTTACTGCTACATGGAATGTCGCCGGAAAATCTCCGCCGAGTT 827
Query 1030 ATTTAAATCTCGACGATTGGCTTCACACTTCTCCTCCTTCCGACATTTACGTTCTTGGCT 1089
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ATTTAAATCTCGATGATTGGCTTCACACTTCTCCTCCTTCCGACATTTACGTTCTTGGCT 887
Query 1090 TCCAAGAGATCGTTCCTTTGAACGCCGGCAACGTTTTAGGCACCGAGGACAACGGACCCG 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCCAAGAGATCGTTCCTTTGAACGCCGGCAACGTTTTAGGCACCGAGGACAACGGACCCG 947
Query 1150 CCAGGAAATGGGTCTCTCTCATCCGAAGAACCCTAAACAGCCTTCCCGGCGGAAGCTGCC 1209
||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||
Sbjct 948 CCAGGAAATGGGTCTCTCTCATCCGGAGAACCTTGAACAGTCTTCCCGGCGGAAGCTGCC 1007
Query 1210 AG-ACTCCTTCTCCTGTTCCCCACCCGGTCGCCGAGCTCGACTCTGACTTTGAAGGCGAC 1268
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1008 -GTACTCCTTCTCCTGTTCCCCACCCGGTCGCCGAGCTCGACTCTGACTTCGAAGGCGAC 1066
Query 1269 TCAGCCGCTGGTGCTAACTCGTTATTCTACCATCGGAGCAGGAGCATGAGGATGGACGC- 1327
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1067 TCAGCCGCTGGGGCTAACTCGTTTTTCTACCATCGGAGCAGGAGCATGAGGATGGAC-CT 1125
Query 1328 GTCTGCATCATCCCTGCCACAGCAGTTTGACCGCAGATTCAGCGTCTGTGACCGTTTCAT 1387
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1126 GTCTGCATCATCCCTGCCACCGCAGTTTGACCGGAGATTCAGCGTCTGTGACCGTTTCAT 1185
Query 1388 GCTGGGCGACACACCTGACGACTTCTACGACCAGAGCTTTAGGTATTGCTCCTCTGAAGA 1447
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1186 GCTGGGCGACAGACCTGACGACTTCTACGACCAGAGCTTCAGGTATTGCTCCTCTGAAGA 1245
Query 1448 CGAGCCAGCAGATTCTCCTTGTCATGATCACTATTCCCCTGTCTCGAGGACTGGTTCCTT 1507
||| | |||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1246 TGAG-C--CAGATTCTCCTTCTCATGATCACTATTCCCCTGTCTCGAGGACTGGATCCTT 1302
Query 1508 TGTGGCAGACGACAGAGACAAAGGAAGAGACAAGTCTAAGTACTGTTTAGTGGCCAGTAA 1567
|||||| | ||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1303 TGTGGC--A-GAC---GAC------AGAGATAAGTCTAAGTACTGTTTAGTGGCCAGTAA 1350
Query 1568 GCAGATGGTTGGGATATTCTTAACCGTTTGGGTCAAGAGTGATCTAAGGGACAGTGTCAA 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GCAGATGGTTGGGATATTCTTAACCGTTTGGGTCAAGAGTGATCTAAGGGACAGTGTCAA 1410
Query 1628 CAACCTCAAAGTGTCTTGCGTTGGGAGAGGCTTGATGGGTTATCTTGGAAACAAGGGCTC 1687
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1411 GAACCTCAAAGTGTCTTGTGTTGGCAGAGGCTTGATGGGTTATCTTGGAAACAAGGGCTC 1470
Query 1688 CATTTCGATCAGCATGTCCGTTCACCAGACAAGCTTCTGCTTTGTCTGCAGCCACTTGAC 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 CATTTCGATCAGCATGTCCGTTCACCAGACAAGCTTCTGCTTTGTCTGCAGCCACTTGAC 1530
Query 1748 GTCTGGTCAGAAAGAAGGAGACGAGCTGAGAAGAAACTCTGATGTTTTGGAGATTCTAAG 1807
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1531 GTCTGGTCAGAAAGAAGGCGACGAGCTAAGAAGAAACTCTGATGTTTTGGAGATTCTGAG 1590
Query 1808 GAAAACCAGATTCCCTAGAGTGAACAATGCCGGCGACGACAAGTCTCCTCAGATGATTTC 1867
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1591 GAAAACCAGATTTCCTAGAGTGAACAATGCAGGCGACGACAAGTCTCCTCAGACGATTTT 1650
Query 1868 AGAACACGATCGGGTAATCTGGCTTGGAGACTTGAACTACCGTATAGCTCTTTCTTACCG 1927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1651 AGAACACGATCGGGTAATCTGGCTTGGAGACTTGAACTACCGTATAGCTCTTTCTTATCG 1710
Query 1928 GTCTGCAAAAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAGCT 1987
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1711 GTCTGCAAAAGCTCTTGTCGAGATGAGAAATTGGAGTGCCTTGCTTGAGAAAGACCAGCT 1770
Query 1988 ACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAAGGAAGGGACTATATATTT 2047
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1771 ACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAACGAAGGGACTATATATTT 1830
Query 2048 TCCACCAACTTACAAATACTCTAACAATTCAGATATTTATGCTGGCGATGATCGCCTTCC 2107
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1831 TCCACCCACTTACAAATACTCTAACAATTCAGATATATATGCTGGCGATGATCGGCTTCC 1890
Query 2108 CAAGGCCAAGAGACGCACTCCAGCATGGTGTGATCGCATACTCTGGCACGGGAGTGGTAT 2167
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1891 CAAGGCCAAGAGACGGACTCCAGCATGGTGTGATCGCATACTCTGGTACGGGAGTGGTAT 1950
Query 2168 CAGTCAGCTGTCATATGTTCGCGGGGAATCAAGGTTCTCTGATCACAGACCAGTCTACAG 2227
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1951 TAATCAGCTGTCATATGTTCGCGGGGAATCAAGATTCTCTGATCACAGACCAGTCTACAG 2010
Query 2228 TTTGTTCTCAGTAGAGATTGAATCGGCATATAGAAACCGTATCAAGAAAAGCTCCAGTTA 2287
|||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2011 TTTGTTTTCAGTAGAGATTGAATCGGTATGTAGAAACCGTATCAAGAAAAGCTCCAGTTA 2070
Query 2288 CACCAGCTCTAGGATCGAAGTTGAGGAACTTCTTCCTCAACGCTATGGATATTCTGAGCT 2347
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2071 CACCAGCTCTAGGATAGAAGTTGAGGAACTTCTTCCTCAACGGTATGGATATTCTGAGCT 2130
Query 2348 TAACCCGTACTAACGATTCATCATCGGTCCTGAATCCGTTTGTAGACAGACCCCAAGGGA 2407
||||||||||| ||||||||||||||||||||||| |||| ||||||| ||| |||||
Sbjct 2131 TAACCCGTACT---GATTCATCATCGGTCCTGAATCCATTTGAAGACAGATCCCGAGGGA 2187
Query 2408 GGATTCAATATTTCTAAAGCCTGAACAAAA-GAAAAATGGGGTTGGAGATTTGTGAATCA 2466
||||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 2188 GGATTCAATGTTTCTAAAGCCTGAACAAAAAGAAAACTGGGGTTGGAGATATGTGAATCA 2247
Query 2467 TAGAAGAGTCATGGAAAGGTCAGATATTGGTCAAGATCTCTGGTGCCTAAGC 2518
|| ||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 2248 -AG--GAGTCATTGAAAAGTCAGATCTTGGTCAAGATCTCTGGTGCCTAAGC 2296
Score = 176 bits (95), Expect = 8e-43
Identities = 99/101 (98%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 347 aagaGGAAAATCCGGGCTGTACCCGAATACCCATCTCTCTGAACTCGGGTTCCAAAGTTG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AAGAGGAAAATCCGGGCTGTACCCGAATACCCATCTCTCTGAACTCGGGTTCCAAAGTTG 320
Query 407 TTGTCTTTCTTTTGCCCCTTCTTGGATTTGGCGTTCAAAGA 447
||||||| |||||||| ||||||||||||||||||||||||
Sbjct 321 TTGTCTTCCTTTTGCCTCTTCTTGGATTTGGCGTTCAAAGA 361
Score = 130 bits (70), Expect = 6e-29
Identities = 145/176 (82%), Gaps = 26/176 (15%)
Strand=Plus/Plus
Query 2598 AGTAATATCTTTAGGATTATAGAGAAGTGACCAGtttttttGGTTTAAAACCCATTAGTT 2657
||| ||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 2328 AGT-ATATCTTTAGGATTATAGAGAAGTGACCATTTTTTTTGGTTT-----TCA--A--- 2376
Query 2658 ATCTCTCCATAAGATTGTAGGATTCGTCAAACTTGTGTATAGTTGTATGCTTTGTAAATA 2717
| |||| || |||||| |||||||||||||||| || || | ||||||||||
Sbjct 2377 A-----CCATTAG-TTGTAGCATTCGTCAAACTTGTG--TA----TA-G-TTTGTAAATA 2422
Query 2718 TAATGGATTCTTTGTAAGGGACCAATGGGTTTAGATTGGAAAGAGCAGAGTTaaaa 2773
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 2423 TAATGGATTCTTTGTAA-GGACCAACGGGTTTAGATTGGAAAGAGCAGAGTTAAAA 2477
Score = 65.8 bits (35), Expect = 2e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 2537 ACAGGAGAAGATTCGAGTGAAAACAGAAGAGAGTA 2571
|||||||||||||||||||||||||||||||||||
Sbjct 2297 ACAGGAGAAGATTCGAGTGAAAACAGAAGAGAGTA 2331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105624249385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5