BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63250.1
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486829 jgi|Araly1|486829|fgenesh2_kg.5__2821__AT3G63250.1 1731 0.0
> Ahg486829 jgi|Araly1|486829|fgenesh2_kg.5__2821__AT3G63250.1
Length=1056
Score = 1731 bits (937), Expect = 0.0
Identities = 1003/1036 (97%), Gaps = 0/1036 (0%)
Strand=Plus/Plus
Query 93 AAGATGACCGGAAACTCTTTTAACTCGATGAAAGATTTCCTGAAGCAGACAGGCGGCTAT 152
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 21 AAGATGACCGGAAGCTCTTTTTGCTCGATGAAAGATTACCTGAAGCAGACAGGCGGCTTT 80
Query 153 GCGGTAATAGACGGAGGGCTTGCAACGGAGTTCGAGAGACATGGAGCAGATCTCAACGAT 212
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GCGGTGATAGACGGAGGGCTTGCAACGGAGTTCGAGAGACATGGAGCAGATCTCAACGAT 140
Query 213 CCTCTCTGGAGCGCCAAATGCCTTGTCACCTCTCCTCACCTCATTCACACCGTGCATCTC 272
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 141 CCTCTCTGGAGCGCCAAATGCCTCCTCACTTCTCCTCACCTCATTCACACCGTGCATCTC 200
Query 273 GATTACCTTGAAGCTGGTGCTGATATCATCTCCAGCGCTTCTTATCAGGCCACGATTCAG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GATTACCTTGAAGCTGGTGCTGATATCATCTCCAGCGCTTCTTATCAGGCCACGATTCAG 260
Query 333 GGGTTTGAAGCAAAGGGATTTTCTAGAGAAGAGAGCGAATCTTTGCTTAAAAAGAGCGTA 392
||||||||||||||||||||||| |||||| | || ||||||||||||| ||||||||||
Sbjct 261 GGGTTTGAAGCAAAGGGATTTTCAAGAGAAAATAGTGAATCTTTGCTTAGAAAGAGCGTA 320
Query 393 GAAATAGCGACTGAAGCTCGGAACTCGTATTATGACAAATGCGGAACTAGCTCTTCCATG 452
|||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 321 GAAATAGCTTGTGAAGCTCGGAACACGTATTATGACAAATGTGGAACTAGCTCTTCCATG 380
Query 453 GATGATAAGATTCTCAAAAAGCGCCCTATATTAGTTGCAGCATCAGTTGGTAGCTACGGT 512
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 381 GATGATAAGATTCTTAAAAAGCGGCCTATATTAGTTGCAGCATCAGTTGGTAGCTATGGT 440
Query 513 GCATACTTGGCTGATGGGTCTGAATACAGTGGAATCTATGGTGATTCGATCACGCTGGAA 572
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 441 GCATACTTGGCTGATGGGTCTGAATACAGTGGAGTCTATGGTGATTCGATCACGCTGGAA 500
Query 573 AAGCTGAAGGATTTTCACCGCAGACGACTCCAAGTTCTGGCGGAATCTGGTGCTGATTTA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AAGCTGAAGGATTTTCACCGCAGACGACTCCAAGTTCTGGCGGAATCTGGTGCTGATTTA 560
Query 633 ATAGCATTTGAGACCATTCCAAACAAGATAGAGGCTCAGGCATTTGCTGATCTATTAGAA 692
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 561 ATAGCATTTGAGACCATTCCAAACAAGATAGAGGCTCAGGCATTTGCTGAGCTGTTAGAG 620
Query 693 GAGGGAGATGTGAAGATTCCTGGGTGGTTTTCATTCAACTCAAAGGATGGCGTAAACGTG 752
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GAGGGAGATGTCAAGATTCCTGGGTGGTTTTCATTCAACTCAAAGGATGGCGTAAACGTG 680
Query 753 GTTAGCGGGGATTCCATCAAGGAGTGTATCTCCATAGCTGAAAATTGTGAGAAAGTAGTG 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GTTAGCGGGGATTCCATCAAGGAGTGTATCTCCATAGCTGAAAATTGTGAGAAAGTAGTG 740
Query 813 GCGGTTGGAATCAACTGTACCCCTCCAAGATTCATAGAGGGGCTAGTTTTGGAGATAGAA 872
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 741 GCGGTTGGAATCAACTGTACCCCTCCAAGATTCATCGAGGGGCTAGTTTTGGAGATAGAA 800
Query 873 AAGGTGACAAGCAAGCCCATACTAGTGTACCCAAACAGCGGAGAAAGCTATGATGCTGAT 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AAGGTGACAAGCAAGCCCATACTAGTGTACCCAAACAGCGGAGAAAGCTATGATGCTGAT 860
Query 933 CGGAAGGAGTGGGTGGAAAACACCGGAGTTGGGGATGAAGACTTTGTATCATACGTAGAG 992
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 861 CGGAAGGAGTGGGTGGAAAACACAGGAGTTGGGGATGAAGACTTTGTGTCATACGTAGAG 920
Query 993 AAATGGATGGATGCAGGAGTGTCTCTCCTGGGAGGTTGCTGCCGCACAACACCAACCACC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AAATGGATGGATGCAGGAGTGTCTCTCCTGGGAGGTTGCTGCCGCACAACACCAACCACC 980
Query 1053 ATCAGAGCCATCCACAAGAGACTCGTCAACCGCAGATCTCTTTAGCATTCAACTTCACTC 1112
||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 981 ATCAGAGCCATCCACAAGAGACTTGTCAACCGCAGATCTCATTAGCTTTCAACTTCACTC 1040
Query 1113 TCTTCTATGAATCTCT 1128
||||||||||||||||
Sbjct 1041 TCTTCTATGAATCTCT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5