BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63260.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486830 jgi|Araly1|486830|fgenesh2_kg.5__2822__AT3G63260.1 2061 0.0
> Ahg486830 jgi|Araly1|486830|fgenesh2_kg.5__2822__AT3G63260.1
Length=1461
Score = 2061 bits (1116), Expect = 0.0
Identities = 1270/1340 (95%), Gaps = 27/1340 (2%)
Strand=Plus/Plus
Query 250 GAGAGAAATCAATGGCCTCTGGCGGCGGAGAGGCGGATAAATCACTTGAAATCGGGTCCG 309
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 141 GAGAGAAACCAATGGCCTCTGGCGGCGGGGAGGCGGATAAATCACTTGAAATCGGGTCCG 200
Query 310 GGACCGCGGATCCCAAAATAGGCGGTACTGGGAGCAGGAGCGCCGGAGAAGAACGATACT 369
|| |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 201 GGTCCGCCGATCCCAAATTAGGCGGTGCTGGGAGCAGGAGCGCCGGAGAAGAACGATACT 260
Query 370 TCAGGGCAGATACACTGGATTTCAGTAAATGGGATTTGCATATGGGTCAAACCTCTACTA 429
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 261 TCAGGGCCGATAAACTGGATTTCAGTAAATGGGATTTGCATATGGGTCAAACCTCTAGTA 320
Query 430 GCAGCGTCCTCACC---AATTCCGCTTCCACGAGCGCTCCCGCACCGGCGATGCAGGAAT 486
||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 321 ACAGCGTCGTCACCAATAATTCCGCTTCGACGAGCGCTCCGGCACCGGCGATGCAGGAAT 380
Query 487 GGGAGATTGACCTCTCCAAACTCGATATGAAGCACGTCCTCGCTCACGGTACTTACGGCA 546
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 381 GGGAGATTGACCTCTCCAAACTCGATATGAGGCACGTCCTCGCTCACGGCACTTATGGCA 440
Query 547 CTGTCTACCGCGGTGTCTACGCCGGCCAAGAAGTCGCAGTGAAAGTGTTAGATTGGGGAG 606
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 441 CTGTCTACCGCGGTGTCTACGCCGGCCAAGACGTCGCAGTCAAAGTGTTAGATTGGGGAG 500
Query 607 AAGATGGTTACGCCACAC-CAGCTGAAACTACAGCTCTCCGTGCTTCCTTCGAGCAAGAG 665
|||||||||||||||| | ||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 501 AAGATGGTTACGCCAC-CGCAGCTGAAACTGCAGCTCTGCGTACTTCCTTCGAGCAAGAG 559
Query 666 GTCGCCGTCTGGCAGAAGCTCGATCATCCCAACGTTACCAAGTTTATAGGAGCATCCATG 725
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 560 GTCGCCGTCTGGCAGAAGCTCGATCATCCCAACGTTACTAAGTTTATAGGAGCATCCATG 619
Query 726 GGAACCTCTGATCTGCGGATCCCTCCTGCTGGTGATACTGGCGGACGTGGTAACGGTGCA 785
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 620 GGAACCTCTGATCTGCGGATCCCTCCTGCTGGTGATACTGGCGGACGTGGTAACGGCGCA 679
Query 786 CATCCTGCGAGGGCCTGTTGTGTTGTGGTTGAATATGTTGCCGGAGGCACGCTTAAGAAG 845
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 680 CATCCTGCAAGGGCCTGTTGTGTTGTCGTTGAATATGTTGCCGGAGGCACGCTCAAGAAG 739
Query 846 TTCCTCATCAAGAAATATAGGGCCAAACTACCCATCAAGGATGTCATTCAGCTCGCTTTG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TTCCTCATCAAGAAATATAGGGCCAAACTACCCATCAAGGATGTCATTCAGCTCGCTTTG 799
Query 906 GATCTCGCTAGAGGGCTTAGTTACCTCCACTCCAAGGCGATTGTACATAGGGACGTGAAG 965
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 800 GATCTCGCTAGAGGGCTTAGTTACCTCCACTCCAAGGCGATTGTACATCGGGACGTGAAG 859
Query 966 TCAGAGAACATGCTGTTACAGCCTAACAAGACGCTGAAGATCGCTGATTTCGGGGTAGCT 1025
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 860 TCAGAGAACATGCTGTTACAACCTAACAAGACGCTGAAGATCGCTGATTTCGGGGTAGCT 919
Query 1026 AGAGTTGAAGCTCAGAACCCTCAAGACATGACGGGTGAAACTGGAACACTTGGATACATG 1085
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AGAGTCGAAGCTCAGAACCCTCAAGACATGACGGGTGAAACTGGAACACTTGGATACATG 979
Query 1086 GCACCAGAGGTTCTTGAAGGAAAGCCTTACAACAGGAAATGCGATGTCTATAGCTTTGGG 1145
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 980 GCACCAGAGGTTCTTGAAGGAAAGCCGTACAACAGGAAATGCGATGTCTATAGCTTTGGG 1039
Query 1146 GTATGCCTCTGGGAAATATACTGCTGTGACATGCCCTATGCTGACTGTAGTTTTGCTGAG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GTATGCCTCTGGGAAATATACTGCTGTGACATGCCCTATGCTGACTGTAGTTTTGCTGAG 1099
Query 1206 ATCTCTCACGCCGTTGTTCATAGGAATCTGAGACCAGAGATTCCGAAATGCTGCCCGCAT 1265
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1100 ATCTCTCACGCCGTCGTTCATAAGAATCTGAGACCAGAGATTCCGAAATGCTGCCCGAAT 1159
Query 1266 GCGGTGGCAAACATCATGAAGAGATGCTGGGACCCGAATCCAGACAGGCGTCCGGAGATG 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GCGGTGGCAAACATCATGAAGAGATGCTGGGACCCGAATCCAGACAGGCGTCCGGAGATG 1219
Query 1326 GAGGAGGTGGTGAAGCTGCTTGAAGCCATAGACACAAGCAAAGGTGGTGGAATGATAGCT 1385
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1220 GAGGAGGTGGTGAAGCTGCTGGAAGCCATAGACACAAGCAAAGGCGGTGGAATGATAGCT 1279
Query 1386 CCGGACCAGTTTCAGGGGTGCCTCTGTTTCTTCAAACCTCGAGGCCCCTGAATCTCTCTC 1445
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CCAGACCAGTTTCAGGGGTGCCTCTGTTTCTTCAAACCTCGAGGCCCCTGAATCTCTCTA 1339
Query 1446 -C-CTCTCT--TTCCTTTTTGCTCCGTGTCTGATATATTCTTGAGAGCTGCGTGATTCTT 1501
| |||||| |||||||| |||||||||| || ||||||||||||||||||||||| |
Sbjct 1340 TCTCTCTCTCGTTCCTTTT-GCTCCGTGTC-GA-ATATTCTTGAGAGCTGCGTGATTGAT 1396
Query 1502 TGGATTTTGTATTTACTTTGAGCTATGGGAGTTGGATTGGTGTGGGTTTTGTCATAAGAA 1561
| ||| | |||| | | || | |||||||||||||||||||||||||||||
Sbjct 1397 TC--TTTGG-ATTT--T--G---TA-G----TTGGATTGGTGTGGGTTTTGTCATAAGAA 1441
Query 1562 TCTTTCTGCGCTCTATGTAT 1581
|||| |||| ||||||||||
Sbjct 1442 TCTTACTGCTCTCTATGTAT 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5