BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63280.1
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486833 jgi|Araly1|486833|fgenesh2_kg.5__2825__AT3G63280.1 1984 0.0
Ahg474726 jgi|Araly1|474726|fgenesh2_kg.1__4680__AT1G54510.1 425 5e-118
> Ahg486833 jgi|Araly1|486833|fgenesh2_kg.5__2825__AT3G63280.1
Length=1955
Score = 1984 bits (1074), Expect = 0.0
Identities = 1214/1280 (95%), Gaps = 15/1280 (1%)
Strand=Plus/Plus
Query 55 GTAGACGGGAAATTGTTCTTTTGCCGCTCTCGGACGAATCGTCTGTGTA-TT-AGTAGTT 112
||||| |||||||||||||||||||||||||||||||||||| | || | || | | |
Sbjct 1 GTAGAGGGGAAATTGTTCTTTTGCCGCTCTCGGACGAATCGT-T-TGAATTTGATTCCCT 58
Query 113 TGATTCTC-TTCACCACGGTGTCGGTACGATTGAAGCTCCTCCCTCCAAGAGCCTTCGTA 171
|| | ||| | |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 59 TG-TGCTCATCCACCACGGTGTCGGCACGATTGAAGCTCCTCCCTCCAAGAGCCGTCGTC 117
Query 172 CAGAGACGTTTCTGCTGAAATTTCAAG--C---AA--GTGTGTTTGTCAGATGGAGCGGT 224
||||||||| ||| |||||||||||| | || |||||||||| ||||||||||||
Sbjct 118 CAGAGACGTCCCTGGTGAAATTTCAAGCACGGGAAGTGTGTGTTTGTTAGATGGAGCGGT 177
Query 225 ATGAAGTCTTGGAGCAGATCGGGAAAGGGTCCTTTGGCTCTGCTCTTCTTGTTAGACACA 284
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 178 ATGAAGTCTTGGAGCAGATCGGGAAAGGGTCCTTTGGCTCTGCTCTTCTTGTCAGACACA 237
Query 285 AACAAGAACGCAAGAAATACGTTTTGAAAAAGATTCGTCTCGCCCGCCAGTCTGATAGGG 344
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AACAAGAACGCAACAAATACGTTTTGAAAAAGATTCGTCTCGCCCGCCAGTCTGATAGGG 297
Query 345 CTCGACGATCAGCTCATCAGGAGATGGAGCTCATTTCTACTGTCCGCAATCCATTTGTTG 404
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTCGCCGATCAGCTCATCAGGAGATGGAGCTCATTTCTACTGTCCGCAATCCATTTGTTG 357
Query 405 TCGAGTACAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTGCATTGTTATTGGATATT 464
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 TCGAGTACAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTGCATCGTTATTGGATATT 417
Query 465 GCCAAGGCGGGGACATGACAGATACCATCAAAAGAGCATGTGGTGTTCATTTTCCTGAGG 524
| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 418 GTGAAGGCGGAGACATGACAGAGACCATAAAAAGAGCATGTGGTGTTCATTTTCCTGAAG 477
Query 525 AGAAATTATGCCAATGGCTTGTCCAACTATTAATGGCCCTCGATTATCTTCACTCCAACC 584
||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 478 AGAAACTCTGCCAATGGCTTGTCCAACTCTTAATGGCACTCGATTATCTTCACTCCAACC 537
Query 585 ATATTCTTCACCGCGATGTCAAGTGTTCTAACATATTCTTGACAAAAGAGCAAGACATAC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATATTCTTCACCGCGATGTCAAGTGTTCTAACATATTCTTGACAAAAGAGCAAGACATAC 597
Query 645 GGCTTGGTGACTTTGGACTCGCTAAGATTCTAACTTCTGATGACCTTACATCCTCTGTTG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGCTTGGTGACTTTGGACTCGCTAAGATTCTAACTTCTGATGACCTTACATCCTCTGTTG 657
Query 705 TTGGAACTCCAAGCTACATGTGTCCTGAGCTTCTTGCTGACATACCTTACGGATCAAAGT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGGAACTCCAAGCTACATGTGTCCTGAGCTTCTTGCTGACATACCTTACGGATCAAAGT 717
Query 765 CAGACATTTGGTCGTTGGGATGCTGCATGTATGAAATGGCTGCTCATAAACCTCCTTTCA 824
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 CAGACATTTGGTCTTTGGGATGCTGCATGTATGAAATGGCTGCTCATAAACCTCCATTCA 777
Query 825 AAGCTTCCGATGTGCAGACACTGATCACCAAAATACACAAGTTGATAATGGATCCTATTC 884
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAGCTTCCGATGTGCAGACATTGATCACCAAAATACACAAGTTGATAATGGATCCTATTC 837
Query 885 CCGCCATGTATTCCGGCTCATTCCGAGGCCTTATTAAAAGCATGTTGAGGAAAAATCCTG 944
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 CGGCCATGTATTCCGGCTCATTCCGAGGCCTTATCAAAAGCATGTTGAGGAAAAATCCTG 897
Query 945 AACTCAGGCCAAGCGCTAACGAGCTGCTTAACCATCCTCATCTTCAGCCTTACATCAGTA 1004
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AACTCAGGCCAAGTGCTAACGAGCTGCTTAACCATCCTCATCTTCAGCCTTACATCAGTA 957
Query 1005 TGGTTTATATGAAGCTAGAGAGCCCCAGAAGAAGCACTTTTCCACTCCAATTTTCTGAGA 1064
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 TGGTTTATCTGAAGCTAGAGAGCCCCAGAAGAAGCACTTATCCACTCCAATTTTCTGAGA 1017
Query 1065 GG-GACGCTACATTGAAGGAAAGAAGGCGTTCATCATTCAGCAACGACAGGAGATTGAAT 1123
| | || ||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 GTTG-CGAGACAGAGAAGGAAAGAAGGCGTTCATCATTCAGCAATGACAGGAGATTGAAT 1076
Query 1124 CCGAGTGTCTCTGATACAGAAGCAGGTTCTGTTTCTTCTTCAGGAAAAGCATCTCCTACA 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1077 CCGAGTGTCTCTGATACAGAAGCAGGTTCTGTTTCTTCTTCAGGAAAAGCATCTCATTCA 1136
Query 1184 CCAATGTTTAATGGAAGAAAAGTGTCAGAAGTAACTGTGGGAGTCGTCAGAGAAGAAATT 1243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1137 CCAATGTTTAATGGAAGAAAAGTGTCAGAAGTAACTGTGGGAGTCGTGAGAGAAGAAATT 1196
Query 1244 GTTCCTCAACGGCAAGAGGAAGCCAAGAAGCAATCAGGTGCAGCCAGAACACCAAGAGTG 1303
||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 1197 GTTCCTCAAAGGCAAGAGGGAGTGAAGAAGCAATCAAGTGCAGCCAGAACACCAAGAGTG 1256
Query 1304 GCTGGGACCTCAGCTAAAGC 1323
||||||||||||||||||||
Sbjct 1257 GCTGGGACCTCAGCTAAAGC 1276
Score = 839 bits (454), Expect = 0.0
Identities = 603/671 (90%), Gaps = 25/671 (4%)
Strand=Plus/Plus
Query 1323 CAAGCACGCAGCGTACTGTTTTTAAACATGAACTAATGAAGGTATCGAATCCTACAGAGA 1382
||||||||| ||||||||||| ||||||||| | || |||||||||||||||||||| |
Sbjct 1309 CAAGCACGCCGCGTACTGTTTCCAAACATGAAGTGATTAAGGTATCGAATCCTACAGACA 1368
Query 1383 GGAGAAGGAGAGTATCTCTGCCGTTGGTCGTGGAAAATCCTTACACTTATGAATCAGATA 1442
||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||
Sbjct 1369 GGAGAAGGAGAGTATCTCTGCCGTTGGCCGTGGAAAATCCTTACATTTACGAATCGGATA 1428
Query 1443 TTACAGCTCTTTGTTCCCTAAATTCACCGGATGTTTCTGTAAACACTCCAAGATTCGACA 1502
|||| ||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 1429 TTACTGCTCTTTGTGGCCTGAATTCACCGGATGTTTCTGTAAACGCTCCAAGAATCGACA 1488
Query 1503 AGATCGCTGAATTCCCTGAAGATATCTTCCAAAACCAAAACAGAGAGACAGCGTCAAGAA 1562
||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 1489 AGATCGCTGAATTCCCTGAAGATGTCTTCCAAAACCAAAACAGAGAGACAGCCTC---AA 1545
Query 1563 GAGAAGTAGCTAGGCACTCTTTTTCTTCTCCTCCTTGTCCGCCTCATGGTGAGGACAATT 1622
||| ||||||||||| ||||||||||||| |||| || |||||||||||||||||||
Sbjct 1546 GAGCAGTAGCTAGGCGCTCTTTTTCTTCTACTCC---TCGGCCTCATGGTGAGGACAATA 1602
Query 1623 CCAA-CGGTTCGATCACAAAGGACAAGTGTACTGTACAGAAAAGGTCAGTTTCGGAGGTA 1681
|||| | |||||||||| |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1603 CCAATC-GTTCGATCACGAAGGACAAATGTACTGTACAGACAAGGTCAGTTTCGGAGGTA 1661
Query 1682 AAACAGAGAAGGTTCGACACGTCATCGTATCAGCAGCGTGCGGAGGCTCTGGAGGGACTG 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AAACAGAGAAGGTTCGACACGTCATCGTATCAGCAGCGTGCGGAGGCTCTGGAGGGACTG 1721
Query 1742 CTGGAGTTCAGTGCAAAGCTTTTGCAGCAGGAACGGTACGATGAGCTCGGGGTTCTGCTT 1801
|||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1722 CTGGAGTTCAGTGCAAGGCTTTTGCAGCAAGAACGATACGATGAGCTTGGGGTTCTGCTT 1781
Query 1802 AAACCCTTTGGAGCCGAGAGGGTGTCTTCGAGGGAGACGGCCATCTGGTTGACCAAGAGC 1861
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1782 AAACCCTTTGGAGCCGAGAGGGTATCTTCGAGGGAGACGGCCATCTGGTTGACCAAGAGC 1841
Query 1862 TTCAAAGAAGCTTCCGTGTAGATGAAGCAACCATAACAAACGCTCTATCTCTTCTTCTCT 1921
|||||||||||||||||||||| |||||||||| ||| | || | || | | | | |
Sbjct 1842 TTCAAAGAAGCTTCCGTGTAGACGAAGCAACCA---CAA-C-CT-TGGCT-TGCAT-T-T 1892
Query 1922 TGGCTTGCTTTTGTCCTGTGTGGTTTGTATATAAATAAAAACGACGACGCATTCGGTTCT 1981
| | ||| | | ||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 1893 -GTC---CTT--G-C-TGTGTGGTTTGTATATAAATAAAAACGGCGATGCGTTCGGTTCT 1944
Query 1982 CATTGCTTAAA 1992
| ||||||||
Sbjct 1945 GACTGCTTAAA 1955
> Ahg474726 jgi|Araly1|474726|fgenesh2_kg.1__4680__AT1G54510.1
Length=2163
Score = 425 bits (230), Expect = 5e-118
Identities = 621/805 (77%), Gaps = 46/805 (6%)
Strand=Plus/Plus
Query 215 ATGGAGCGGTATGA-AGTCTTGGAGCAGATCGGGAAAGGGTCCTTTGGCTCTGCTCTTCT 273
||||| | |||||| | |||| ||||| || || ||||| || ||||| || |||||| |
Sbjct 127 ATGGAACAGTATGAGATTCTT-GAGCAAATTGGAAAAGGATCTTTTGGGTCAGCTCTT-T 184
Query 274 T-GTTAGACACAAACA--AGAACGCAAGAAATACGTTTTGAAAAAGATTCGTCTCGCCCG 330
| || ||||| || || |||| | || ||||| || ||||||||||| ||||| |||||
Sbjct 185 TAGTGAGACATAAGCATGAGAA-G-AAAAAATATGTATTGAAAAAGATCCGTCTTGCCCG 242
Query 331 CCAGTCTGATAGGGCTC-GACGATCAGCTCATCAGGAGATGGAGCTCATTTCTACTGTCC 389
|| || | ||| | | |||| || || ||||| ||||||||||| || || | | |
Sbjct 243 GCAAACTCAGAGGAC-CAGACGGTCTGCACATCAAGAGATGGAGCTTATCTCGAAAATGC 301
Query 390 G-CAATCCATTTGTTGTCGAGTACAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTGC 448
| | |||||||| |||| || ||||||||||| ||||| ||||||| |||||||||||||
Sbjct 302 GTC-ATCCATTTATTGTGGAATACAAAGATTCTTGGGTGGAAAAGGCTTGCTATGTGTGC 360
Query 449 ATTGTTATTGGATATTGCCAAGGCGGGGACATGACAGATA-CCATCAA-AAGA-GC-ATG 504
|| || || || ||||| |||| ||||||||| || | | | ||||| || | | |||
Sbjct 361 ATCGTCATAGGTTATTGTGAAGGAGGGGACATGGCACA-AGCTATCAAGAA-ATCCAATG 418
Query 505 TG-GTGTTCATTTTCCTGAGGAGAAATTATGCCAA-TGGCTTGTCCAACTAT-TAATGGC 561
| || | ||||| | || |||||| | || ||| |||||||| || || | | ||||
Sbjct 419 -GCATG-T-ATTTTTCGGAAGAGAAACTGTG-CAAGTGGCTTGTTCAGCT-TCTGATGGG 473
Query 562 CCTCGATTATCTT-CACTCCAACCATATTCTTCACCGCGATGTCAAGTGTTCTAACATAT 620
||| || || ||| ||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 474 CCTTGAGTA-CTTACACTCTAACCATATTCTTCATCGTGATGTCAAGTGTTCTAACATAT 532
Query 621 TCTTGACAAAAGAGCAAGACATACGGCTTGGTGACTTTGGACTCGCTAAGATTCTAACTT 680
||||||| ||||||||||| ||||| |||||||| ||||| | || ||||||||||| |
Sbjct 533 TCTTGACCAAAGAGCAAGATATACGCCTTGGTGATTTTGGTTTAGCCAAGATTCTAACAT 592
Query 681 CTGATGACCTTACATCCTCTGTTGTTGGAACTCCAAGCTACATGTGTCCTGAGCTTCTTG 740
| || | || || ||||| ||||| || ||||| ||||| ||||| ||||||||||| |
Sbjct 593 CCGACAATCTCACTTCCTCCGTTGTCGGGACTCCCAGCTATATGTGCCCTGAGCTTCTAG 652
Query 741 CTGACATACCTTACGGATC-AAAGTCAGACATTTGGTCGTTGGGATGCTGCATGTATGAA 799
|||| |||||||| || || ||| || ||||||||||| || |||||||| || ||||||
Sbjct 653 CTGATATACCTTATGGTTCTAAA-TCTGACATTTGGTCTTTAGGATGCTGTATATATGAA 711
Query 800 ATGGCTGCTCATAAACCTCC-TTTCAAAGC-TTCCGATGTGCA-GACACTGATCACCAAA 856
|||||| || ||| || | ||| ||||| || ||| |||| | ||||||| | ||
Sbjct 712 ATGGCTTATCTTAAGCCGGCATTT-AAAGCATTT-GATATGCAAG-CACTGATTAATAAG 768
Query 857 ATACACAAGTTGATAATGGATCCTATTCCC-GCCATGTATTCCGGCTCATTCCGAGGCCT 915
||| ||||| ||| ||| ||| | ||| || | ||||| || ||||||||| | ||
Sbjct 769 ATAAACAAGACGATTGTGGCTCCGCT-CCCTGCAAAATATTCTGGTTCATTCCGAAGTCT 827
Query 916 TATTAAAAGCATGTTGAGGAAAAATCCTGAACT-CAGGCCAAGC-GC-TAACGAGCTGCT 972
| | ||||||||| || | ||||| || ||| | | ||||| | || | | || | ||
Sbjct 828 TGTCAAAAGCATGCTGCGAAAAAACCCAGAAGTTC-GGCCAT-CTGCCTCA-GATTTACT 884
Query 973 TA-ACCATCCTCATCTTCAGCCTTA 996
|| || |||| ||||||||||||||
Sbjct 885 TAGAC-ATCCACATCTTCAGCCTTA 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77704099800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5