BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63290.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486835 jgi|Araly1|486835|fgenesh2_kg.5__2827__AT3G63290.1 1491 0.0
> Ahg486835 jgi|Araly1|486835|fgenesh2_kg.5__2827__AT3G63290.1
Length=1633
Score = 1491 bits (807), Expect = 0.0
Identities = 1000/1090 (92%), Gaps = 26/1090 (2%)
Strand=Plus/Plus
Query 69 ATGGCAGAAACAGAGATTCTTGAGCCCTATCAACTGTCGTTCTCGGATCTTCTTTTGTCC 128
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGGCAGAAGCAGAGATTCTTGAGCCCTATCAACTGTCCTTCTCGGATCTTCTCTTGTCC 60
Query 129 TCTCG---T-AATC-GC-TCT-C-A---ATG---G-ATCTCGAAAAATGTGATGGACGCT 173
||||| | | || | ||| | | | | | ||||||| ||||||||||||||||
Sbjct 61 TCTCGCTTTCATTCTTCTTCTCCGAGTGACGACCGTATCTCGAGAAATGTGATGGACGCT 120
Query 174 CTTGGCCCCACCGGTCCTGGTCTCCTTTGTATCACCGGCGTTCTTGGCTCCGCCTTTCTC 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CTTGGCCCCACCGGTCCTGGTCTCCTTTGTATCACCGGCGTTCTTGGCTCCGCCCTTCTC 180
Query 234 CGCCGTAAACTCCTTCCTATGGCTCGGAAGCTGGCTCTGCTCGATCCGGACAAGCGGAAA 293
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 CGCCGTAAACTCCTTCCTATGGCTCGGAAGCTGGCTCTGCTTGATCCGGACAAGCGGAAA 240
Query 294 CTCATTCTCATGGAGCACCACTTGGGTAGCGACGTTCCTCTCAAGAATCCAGAACGAGAT 353
| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 CGCATTCTCAAGGAGCACCACTTGGGTAGCGACCTTCCTCTCAAGAATCCAGAACGAGAT 300
Query 354 GTCTCCTCTTTTGCAATGCAGCTCAATTATGAAAGAACAACTTATAAATCCTCACTGGGA 413
|||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
Sbjct 301 GTCTCCTCTTTTGCAATGCAGCTCAATTATGAAACAACAACTTGTAAATCTTCACTGGAA 360
Query 414 AAGCTGTGGTTCGATGAGGCTGGATCAAAACTGGACTTGCAGGAGGATGATGATGATGCT 473
|||||||||||||||||||||| | ||||||||||||||||| |||| |||||||| | |
Sbjct 361 AAGCTGTGGTTCGATGAGGCTGTAGCAAAACTGGACTTGCAGCAGGAGGATGATGA-G-T 418
Query 474 TTCACAAATCTTGGTGGTGCTTTTAAAGAACTCGGGTTCTGCATGAGGGAGTTGGGCTTG 533
| ||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 419 T-CACTAATCTTGGTGGTGCTTTTAAAGAGCTAGGGTTCTGCATGAGGGAATTGGGCTTG 477
Query 534 TCCATAGCTCGTCTATGCGACAGGGAGATTGGCGGAGGCTTGCTGGAGGAGAGCTTACTG 593
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 478 TCTATAGCTCGTCTTTGCGACAGGGAGATTGGTGGAGGCTTGCTGGAGGAGAGTTTACTG 537
Query 594 GATTCTTGCACAGCCAAAGGACGTCTCATACATTACCACTCCGCTGCTGATAAATATGCT 653
|| ||| ||||||| |||||||| || |||||||||||||| ||||| ||||||||||||
Sbjct 538 GAGTCTCGCACAGCTAAAGGACGCCTTATACATTACCACTCAGCTGCAGATAAATATGCT 597
Query 654 CTCAGAGAATCCCAGAGGAGAAACCAATCTGGTA-ACCGAGTATCAAGCAAGAGGAGAGT 712
||||||||| || |||| |||||||||||||||| || ||||||| ||||||||||||||
Sbjct 598 CTCAGAGAAGCCGAGAGCAGAAACCAATCTGGTAGAC-GAGTATCGAGCAAGAGGAGAGT 656
Query 713 CCAGAACGCTGCTGAGCAAGAGCTGAACCGTAGAAATGGAGCTGGTTTGAGTGGGAGTCA 772
|||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 657 CCAGAATGCTGCTGAGCAAGAGGGGAACCACAGAAATGGAGCTGGTTTGAGTGGGAGCCA 716
Query 773 CTTCAATCTGTGGCAGCAGTGGCATTACGATTATGGCATCTTTACTGTTCTCACGGATCC 832
||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 717 CTTCAATCTCTGGCAACAGTGGCATTACGATTATGGAATCTTTACTGTTCTCACCGATCC 776
Query 833 TATGTTTCTATCG-CCGTATTCCTATC-AGGAATTCAGTTTGATGAGCAGCCATTCTTAC 890
||||||||||||| || || ||||| | |||||| || |||||||||||||||||||||
Sbjct 777 TATGTTTCTATCGTCC-TACTCCTA-CGAGGAATGCACTTTGATGAGCAGCCATTCTTAT 834
Query 891 CTGCAGATCTATCATCCCAGCAAGAACAAGTTCTACATGGTCAAGACTCCACAAGACAGT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 CTGCAGATCTATCATCCCAGCAAGAACAAGTTCTACATGGTCAAGACTCCACAGGACAGT 894
Query 951 TTT-TTGGTCCAAATCGGAGAATCTGCTGATATTTTGTCCAAAGGGAAGCTACGGTCGAC 1009
||| ||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 895 TTTATTGTTC-AAATTGGAGAATCTGCTGATATTTTGTCCAAAGGGAGGCTACGGTCGAC 953
Query 1010 CCTTCACTGTGTGTGCAAACCAGAGAAGCTGGATCACGTAAGCCGTGAGACATTTGTTGT 1069
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 954 CCTTCACTGTGTGTGCAAACCAGAGAAGCCGGATCACATAAGCCGTGAGACATTTGTGGT 1013
Query 1070 CTTCTTGCACCCAAAGTGGAGCCAAACTTTCTCAGTCTCAGAATATACAATGGAACATCT 1129
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1014 GTTCTTGCAGCCAAAGTGGAGCCAAACTTTCTCGGTCTCAGAATATACAATGGAACATCT 1073
Query 1130 AAGGTCGGAT 1139
|||||| |||
Sbjct 1074 AAGGTCAGAT 1083
Score = 652 bits (353), Expect = 0.0
Identities = 473/526 (90%), Gaps = 27/526 (5%)
Strand=Plus/Plus
Query 1137 GATGAGGTCGTCCCTAGACCAGATTTACAGAATATTGTTCCACCTCTATCGTCTCGGTTA 1196
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1111 GATGAGGTCGTCCCTAGACCAGATATACAAAAAATTGTTCCACCTCTATCGTCTCGGTTA 1170
Query 1197 AGGGATGGGATGACTTTTGCCGAGTTTTCACGTGAAACGACAAAGCAGTACTACGGAGGG 1256
|||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1171 AGGGATGGGATGACATTTGCCGAGTTTTCTCGCGAAACCACAAAGCAGTACTACGGAGGG 1230
Query 1257 AATGGTTTGCAATCTAATAGATAGCCGTGCCCCAGGTTAATAGC----TTGTCT-A-A-- 1308
| ||||||||||||||||||||||||||||||||||| |||||| |||||| | |
Sbjct 1231 AGTGGTTTGCAATCTAATAGATAGCCGTGCCCCAGGTAAATAGCTTGTTTGTCTAATATT 1290
Query 1309 T---CTTTAGGTAGTTAAATTCAAAATAATCTTTAGGTAATGAGTAGTGGAAGGCAAGAG 1365
| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 1291 TAGACTTTAGGTAGTTAACTTCAGAATAATCTTTAGGTAATGAGTAGTTGAAGGCAAGAA 1350
Query 1366 GAATGAGCCAAGAGGGTTAGTTGTAAAAGAGATTAGATTAAAGGGAGAGTTGGGATTCGT 1425
|||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1351 GAATGAGCCACGAGGGTTTGTACTAAAAGAGATTAGATTAAAGGGAAAGTTGGGATTCGT 1410
Query 1426 TATGTGTACTTCGATGTTGGAGCCAAAACAACAGTGAAAGCTGTTACATCGTTTTCACAG 1485
|||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||
Sbjct 1411 TATGTGTACTTCGATGTTGGAGCC--AA-AACAGGGGAAGCTGTTACATCGTTTTCACAG 1467
Query 1486 TCAAAAGCTCTCCCTTTCAAACATGC--TTTTTG---GTTGTGGTTGCTCTTCTTTAGTC 1540
||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 1468 ACAAAAGCTCTCTCTTTCAAACATGCTTTTTTTGTTTGTTGTTGTTGCTCTTCTTTAGTC 1527
Query 1541 TCTCTCTGTGACTCAGTTTATGTTCCTGTTGTGTCTCCCCTGTTGCTGTTCCAAACTTAC 1600
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1528 TCTCTCTGTGACTCAGTTTATGTTCCTGTTGTGTCTCCCCCGATGCTGTTCCAAACTTAC 1587
Query 1601 ATCTCTTTGTTTG--------CTTTCAAGCGTCGCATTAAGACAAA 1638
||||||||||||| ||||||||||||||||| |||||||
Sbjct 1588 ATCTCTTTGTTTGTTTGTGTGCTTTCAAGCGTCGCATTGAGACAAA 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5