BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63290.1 Length=1655 Score E Sequences producing significant alignments: (Bits) Value Ahg486835 jgi|Araly1|486835|fgenesh2_kg.5__2827__AT3G63290.1 1491 0.0 > Ahg486835 jgi|Araly1|486835|fgenesh2_kg.5__2827__AT3G63290.1 Length=1633 Score = 1491 bits (807), Expect = 0.0 Identities = 1000/1090 (92%), Gaps = 26/1090 (2%) Strand=Plus/Plus Query 69 ATGGCAGAAACAGAGATTCTTGAGCCCTATCAACTGTCGTTCTCGGATCTTCTTTTGTCC 128 ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1 ATGGCAGAAGCAGAGATTCTTGAGCCCTATCAACTGTCCTTCTCGGATCTTCTCTTGTCC 60 Query 129 TCTCG---T-AATC-GC-TCT-C-A---ATG---G-ATCTCGAAAAATGTGATGGACGCT 173 ||||| | | || | ||| | | | | | ||||||| |||||||||||||||| Sbjct 61 TCTCGCTTTCATTCTTCTTCTCCGAGTGACGACCGTATCTCGAGAAATGTGATGGACGCT 120 Query 174 CTTGGCCCCACCGGTCCTGGTCTCCTTTGTATCACCGGCGTTCTTGGCTCCGCCTTTCTC 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 CTTGGCCCCACCGGTCCTGGTCTCCTTTGTATCACCGGCGTTCTTGGCTCCGCCCTTCTC 180 Query 234 CGCCGTAAACTCCTTCCTATGGCTCGGAAGCTGGCTCTGCTCGATCCGGACAAGCGGAAA 293 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 CGCCGTAAACTCCTTCCTATGGCTCGGAAGCTGGCTCTGCTTGATCCGGACAAGCGGAAA 240 Query 294 CTCATTCTCATGGAGCACCACTTGGGTAGCGACGTTCCTCTCAAGAATCCAGAACGAGAT 353 | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 CGCATTCTCAAGGAGCACCACTTGGGTAGCGACCTTCCTCTCAAGAATCCAGAACGAGAT 300 Query 354 GTCTCCTCTTTTGCAATGCAGCTCAATTATGAAAGAACAACTTATAAATCCTCACTGGGA 413 |||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| | Sbjct 301 GTCTCCTCTTTTGCAATGCAGCTCAATTATGAAACAACAACTTGTAAATCTTCACTGGAA 360 Query 414 AAGCTGTGGTTCGATGAGGCTGGATCAAAACTGGACTTGCAGGAGGATGATGATGATGCT 473 |||||||||||||||||||||| | ||||||||||||||||| |||| |||||||| | | Sbjct 361 AAGCTGTGGTTCGATGAGGCTGTAGCAAAACTGGACTTGCAGCAGGAGGATGATGA-G-T 418 Query 474 TTCACAAATCTTGGTGGTGCTTTTAAAGAACTCGGGTTCTGCATGAGGGAGTTGGGCTTG 533 | ||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct 419 T-CACTAATCTTGGTGGTGCTTTTAAAGAGCTAGGGTTCTGCATGAGGGAATTGGGCTTG 477 Query 534 TCCATAGCTCGTCTATGCGACAGGGAGATTGGCGGAGGCTTGCTGGAGGAGAGCTTACTG 593 || ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 478 TCTATAGCTCGTCTTTGCGACAGGGAGATTGGTGGAGGCTTGCTGGAGGAGAGTTTACTG 537 Query 594 GATTCTTGCACAGCCAAAGGACGTCTCATACATTACCACTCCGCTGCTGATAAATATGCT 653 || ||| ||||||| |||||||| || |||||||||||||| ||||| |||||||||||| Sbjct 538 GAGTCTCGCACAGCTAAAGGACGCCTTATACATTACCACTCAGCTGCAGATAAATATGCT 597 Query 654 CTCAGAGAATCCCAGAGGAGAAACCAATCTGGTA-ACCGAGTATCAAGCAAGAGGAGAGT 712 ||||||||| || |||| |||||||||||||||| || ||||||| |||||||||||||| Sbjct 598 CTCAGAGAAGCCGAGAGCAGAAACCAATCTGGTAGAC-GAGTATCGAGCAAGAGGAGAGT 656 Query 713 CCAGAACGCTGCTGAGCAAGAGCTGAACCGTAGAAATGGAGCTGGTTTGAGTGGGAGTCA 772 |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| || Sbjct 657 CCAGAATGCTGCTGAGCAAGAGGGGAACCACAGAAATGGAGCTGGTTTGAGTGGGAGCCA 716 Query 773 CTTCAATCTGTGGCAGCAGTGGCATTACGATTATGGCATCTTTACTGTTCTCACGGATCC 832 ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 717 CTTCAATCTCTGGCAACAGTGGCATTACGATTATGGAATCTTTACTGTTCTCACCGATCC 776 Query 833 TATGTTTCTATCG-CCGTATTCCTATC-AGGAATTCAGTTTGATGAGCAGCCATTCTTAC 890 ||||||||||||| || || ||||| | |||||| || ||||||||||||||||||||| Sbjct 777 TATGTTTCTATCGTCC-TACTCCTA-CGAGGAATGCACTTTGATGAGCAGCCATTCTTAT 834 Query 891 CTGCAGATCTATCATCCCAGCAAGAACAAGTTCTACATGGTCAAGACTCCACAAGACAGT 950 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 835 CTGCAGATCTATCATCCCAGCAAGAACAAGTTCTACATGGTCAAGACTCCACAGGACAGT 894 Query 951 TTT-TTGGTCCAAATCGGAGAATCTGCTGATATTTTGTCCAAAGGGAAGCTACGGTCGAC 1009 ||| ||| || |||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 895 TTTATTGTTC-AAATTGGAGAATCTGCTGATATTTTGTCCAAAGGGAGGCTACGGTCGAC 953 Query 1010 CCTTCACTGTGTGTGCAAACCAGAGAAGCTGGATCACGTAAGCCGTGAGACATTTGTTGT 1069 ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || Sbjct 954 CCTTCACTGTGTGTGCAAACCAGAGAAGCCGGATCACATAAGCCGTGAGACATTTGTGGT 1013 Query 1070 CTTCTTGCACCCAAAGTGGAGCCAAACTTTCTCAGTCTCAGAATATACAATGGAACATCT 1129 |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1014 GTTCTTGCAGCCAAAGTGGAGCCAAACTTTCTCGGTCTCAGAATATACAATGGAACATCT 1073 Query 1130 AAGGTCGGAT 1139 |||||| ||| Sbjct 1074 AAGGTCAGAT 1083 Score = 652 bits (353), Expect = 0.0 Identities = 473/526 (90%), Gaps = 27/526 (5%) Strand=Plus/Plus Query 1137 GATGAGGTCGTCCCTAGACCAGATTTACAGAATATTGTTCCACCTCTATCGTCTCGGTTA 1196 |||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| Sbjct 1111 GATGAGGTCGTCCCTAGACCAGATATACAAAAAATTGTTCCACCTCTATCGTCTCGGTTA 1170 Query 1197 AGGGATGGGATGACTTTTGCCGAGTTTTCACGTGAAACGACAAAGCAGTACTACGGAGGG 1256 |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||| Sbjct 1171 AGGGATGGGATGACATTTGCCGAGTTTTCTCGCGAAACCACAAAGCAGTACTACGGAGGG 1230 Query 1257 AATGGTTTGCAATCTAATAGATAGCCGTGCCCCAGGTTAATAGC----TTGTCT-A-A-- 1308 | ||||||||||||||||||||||||||||||||||| |||||| |||||| | | Sbjct 1231 AGTGGTTTGCAATCTAATAGATAGCCGTGCCCCAGGTAAATAGCTTGTTTGTCTAATATT 1290 Query 1309 T---CTTTAGGTAGTTAAATTCAAAATAATCTTTAGGTAATGAGTAGTGGAAGGCAAGAG 1365 | |||||||||||||| |||| |||||||||||||||||||||||| |||||||||| Sbjct 1291 TAGACTTTAGGTAGTTAACTTCAGAATAATCTTTAGGTAATGAGTAGTTGAAGGCAAGAA 1350 Query 1366 GAATGAGCCAAGAGGGTTAGTTGTAAAAGAGATTAGATTAAAGGGAGAGTTGGGATTCGT 1425 |||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 1351 GAATGAGCCACGAGGGTTTGTACTAAAAGAGATTAGATTAAAGGGAAAGTTGGGATTCGT 1410 Query 1426 TATGTGTACTTCGATGTTGGAGCCAAAACAACAGTGAAAGCTGTTACATCGTTTTCACAG 1485 |||||||||||||||||||||||| || ||||| | ||||||||||||||||||||||| Sbjct 1411 TATGTGTACTTCGATGTTGGAGCC--AA-AACAGGGGAAGCTGTTACATCGTTTTCACAG 1467 Query 1486 TCAAAAGCTCTCCCTTTCAAACATGC--TTTTTG---GTTGTGGTTGCTCTTCTTTAGTC 1540 ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||| Sbjct 1468 ACAAAAGCTCTCTCTTTCAAACATGCTTTTTTTGTTTGTTGTTGTTGCTCTTCTTTAGTC 1527 Query 1541 TCTCTCTGTGACTCAGTTTATGTTCCTGTTGTGTCTCCCCTGTTGCTGTTCCAAACTTAC 1600 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1528 TCTCTCTGTGACTCAGTTTATGTTCCTGTTGTGTCTCCCCCGATGCTGTTCCAAACTTAC 1587 Query 1601 ATCTCTTTGTTTG--------CTTTCAAGCGTCGCATTAAGACAAA 1638 ||||||||||||| ||||||||||||||||| ||||||| Sbjct 1588 ATCTCTTTGTTTGTTTGTGTGCTTTCAAGCGTCGCATTGAGACAAA 1633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62049009105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5