BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63300.1 Length=1759 Score E Sequences producing significant alignments: (Bits) Value Ahg486837 jgi|Araly1|486837|fgenesh2_kg.5__2829__AT3G63300.1 2586 0.0 > Ahg486837 jgi|Araly1|486837|fgenesh2_kg.5__2829__AT3G63300.1 Length=1633 Score = 2586 bits (1400), Expect = 0.0 Identities = 1564/1641 (95%), Gaps = 20/1641 (1%) Strand=Plus/Plus Query 1 AAGCTCTGAAGTCGAAGCAAAGTTAATTACagagagagagaaaggatggagagagaACTC 60 |||||||||||||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 1 AAGCTCTGAAGTCGAAGCAAAG----TCA-AGAGAGAGAGAAAGGATGGAGAGAGAACTT 55 Query 61 AGACGACCGAACCCAATCAACAGCTCTCGCCGGCCGGAGATATTTTCTTCAGGCGGTAGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 56 AGACGACCGAACCCAATCAACAGCTCTCGCCGGCCGGAGATATTTTCTTCTGGCGGTAGT 115 Query 121 AGTACTCAACTACCGGAAAGCCCACGAGGCCCAATGGAGTTCTTGTCTAGATCCTGGAGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 AGTACTCAACTACCGGAAAGCCCACGAGGCCCAATGGAGTTCTTGTCTAGATCCTGGAGT 175 Query 181 GTCTCTGCCTTGGAAGTCTCCAGAGCTCTCCACACCGCCAAATCAGCTTCAGCCACCAAC 240 ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 176 GTCTCCGCCTTGGAAGTCTCCAGAGCTCTCCACACAGCCAAATCAGCTTCGGCCACCAAC 235 Query 241 AGGCCTCCCTCATCCATTAACACTCCGATACCGGAAGAAACGCTAAACCCTGAGAAAGAA 300 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 236 AGGCCTCCCTCGTCCATTAACACTCCGATACCGGAAGAAACGTTAAACCCTGAGAAAGAA 295 Query 301 GAATGTCCGCCGGAG-A-A-CAG------TACTAGTGTTAGTAGCCAGTTCTCGTTCGCT 351 ||||||||||||||| | | ||| || |||||||||||| ||||||||||||||| Sbjct 296 GAATGTCCGCCGGAGAACACCAGCAACAATAGTAGTGTTAGTAGTCAGTTCTCGTTCGCT 355 Query 352 GCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATCGGAGGTGTCACCG 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATCGGAGGTGTCACCG 415 Query 412 TTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACG 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACG 475 Query 472 GAGACAGACAGTCCTCCTATCTCCCCTTCCGATGAATTCGACGACGTCATCAAGTATTTT 531 ||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||| Sbjct 476 GAGACAGACAGTCCTCCCATCTCCCCCTCCGATGACTTCGACGACGTCGTCAAGTATTTT 535 Query 532 CGCACCCACAACACCATACATCCTCTCTTCTCCGGCACAGGAGGCAGCCGTGGTACCACC 591 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 536 CGCACCCACAACACCATACAGCCTCTCTTCTCCGGCACAGGAGGCAGCCGTGGTACCACT 595 Query 592 GGAAATGGGAGCAATACCCCCATGGCTGGAACCGGTCCAAAGACAGTTGGTAGGTGGCTC 651 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 596 GGAAATGGTAGCAATACCCCCATGGCTGGAACCGGCCCAAAGACAGTTGGTAGGTGGCTC 655 Query 652 AAGGACCGTAAGGAAAAGAAGAAAGAAGAGACTAG-GACTCAGAATGCACAGGTTCACGC 710 ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| Sbjct 656 AAGGACCGTAAGGAAAAGAAGAAAGAAGAGACTAGAG-CTCAGAATGCACAGGTCCACGC 714 Query 711 AGCTGTTTCTGTTGCAGCGGTTGCATCTGCTGTGGCAGCTGTAGCAGCAGCCACAGCAGC 770 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 715 AGCTGTTTCTGTTGCAGCGGTTGCATCTGCCGTGGCAGCTGTTGCAGCAGCCACAGCTGC 774 Query 771 TTCTTCCCCTGGTAAGAACGAGCAGATGGCCAGAATCGATATGGCCATGGCTTCAGCGGC 830 |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 775 TTCTTCACCTGGTAAAAACGAGCAGATGGCCAGAATCGATATGGCCATGGCTTCTGCGGC 834 Query 831 TGCTCTGGTGGCTGCTCAGTGTGTGGAGGCTGCAGAAATCATGGGAGCAGATAGGGATCA 890 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 835 TGCTCTGGTGGCTGCTCAGTGTGTGGAGGCTGCAGAAATCATGGGAGCAGAAAGGGATT- 893 Query 891 TT-TGACATCCGTGGTGAGCTCTGCCGTGAATGTTAAGTCCCATGACGATATTGTCACCC 949 || |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 894 TTCTGACATCCGTTGTGAGCTCTGCAGTGAATGTTAAGTCCCATGACGATATTGTCACCC 953 Query 950 TTACTGCAGCTGCTGCAACAGCTCTGCGAGGAGCAGCTACACTCAAGGCAAGAGCGCTTA 1009 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 TTACTGCAGCTGCCGCAACAGCTCTGCGAGGAGCAGCTACACTCAAGGCAAGAGCGCTTA 1013 Query 1010 AGGAAGTATGGAACATAGCTGCAGTATTGCCAGCCGAGAAAGGGGCAAGTTCAGCGTTGT 1069 | |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| Sbjct 1014 AAGAAGTATGGAACATAGCTGCAGTATTACCAGCCGAGAAAGGAACAAGTTCAGCTTTGT 1073 Query 1070 GTGGACAGGTTGACACAAAGCATAGTGATAGCAGCTTTAGTGGAGAATTACCTGTGGCTG 1129 |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1074 GTGGCCAGGTTGACACAAAGCACAGTGATAGCAGCTTTAGTGGAGAATTACCTGTTGCTG 1133 Query 1130 GGGAAGACTTCCTTGGCGTCTGTAACCAGGAATTACTAGCTAAAGGCACTGAGCTCCTCA 1189 |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1134 GGGAAGACGTCCTAGGCGTCTGTAACCAGGAACTACTAGCTAAAGGCACTGAGCTCCTCA 1193 Query 1190 AACGAACTCGTGGAGGTGAACTCCACTGGAAGATTGTCTCTGTCTACATCAACAAAGCAG 1249 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1194 AACGAACTCGTGGAGGTGATCTCCACTGGAAGATTGTCTCTGTCTACATCAACAAAGCAG 1253 Query 1250 GCCAAGCTGTGCTGAAAATGAAAAGTAAACACGTTGGAGGGACCTTCACAAAGAAGAAGA 1309 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 GCCAAGTTGTGCTGAAAATGAAAAGTAAACACGTTGGAGGGACCTTCACAAAGAAGAAGA 1313 Query 1310 AACATATGGTGCTTGAAGTGAGAAAGGATATACCTGCATGGGCTGGCAGAGATCTTTTCA 1369 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1314 AACATATGGTGCTTGAAGTGAGAAAGGATATACCTGCATGGGCTGGCAGGGATCTTTTCA 1373 Query 1370 ACGGAGACAAGCATCACTACTTTGGCTTAAAGACAGAAACAAAGAGGGTCATTGAATTTG 1429 |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1374 ACGGAGACAAGCATCATTACTTTGGCTTAAAGACGGAAACAAAGAGGGTCGTTGAATTTG 1433 Query 1430 AGTGCAGAAACCAAAGGGAATACGAGATATGGACTCAGGGCGTAT-CCAGGCTACTTGCC 1488 ||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||| Sbjct 1434 AGTGCAGAAACCAAAGGGAATACGAGATATGGACTCAGGGCGTTTGCC-GCCTACTTGCC 1492 Query 1489 ATTGCTGCTGAGAAGAAGCAGAAAAGTTCCATGTCCAAATGGATGGCACCTTAACAACAT 1548 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1493 ATTGCAGCTGAGAGGAAGCAGAAAAGTTCCATGTCCAAATGGATGGCACCTTAACAACAT 1552 Query 1549 AAGCTAGGAAAGAAGTAGATGCTTTGTAGAACGAACTGCTTATGATAAGAATAGGTTTAA 1608 || |||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||| || Sbjct 1553 AAACTAGGAGAGAAGTAGATGCTTTGTGGAACGAAGTGCTTATTATAAGAATAGGTTGAA 1612 Query 1609 ACATAATGGAGTAGAAGACAT 1629 ||||||||||||||||||||| Sbjct 1613 ACATAATGGAGTAGAAGACAT 1633 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66010394585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5