BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63300.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486837 jgi|Araly1|486837|fgenesh2_kg.5__2829__AT3G63300.1 2586 0.0
> Ahg486837 jgi|Araly1|486837|fgenesh2_kg.5__2829__AT3G63300.1
Length=1633
Score = 2586 bits (1400), Expect = 0.0
Identities = 1564/1641 (95%), Gaps = 20/1641 (1%)
Strand=Plus/Plus
Query 1 AAGCTCTGAAGTCGAAGCAAAGTTAATTACagagagagagaaaggatggagagagaACTC 60
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1 AAGCTCTGAAGTCGAAGCAAAG----TCA-AGAGAGAGAGAAAGGATGGAGAGAGAACTT 55
Query 61 AGACGACCGAACCCAATCAACAGCTCTCGCCGGCCGGAGATATTTTCTTCAGGCGGTAGT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 56 AGACGACCGAACCCAATCAACAGCTCTCGCCGGCCGGAGATATTTTCTTCTGGCGGTAGT 115
Query 121 AGTACTCAACTACCGGAAAGCCCACGAGGCCCAATGGAGTTCTTGTCTAGATCCTGGAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 AGTACTCAACTACCGGAAAGCCCACGAGGCCCAATGGAGTTCTTGTCTAGATCCTGGAGT 175
Query 181 GTCTCTGCCTTGGAAGTCTCCAGAGCTCTCCACACCGCCAAATCAGCTTCAGCCACCAAC 240
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 176 GTCTCCGCCTTGGAAGTCTCCAGAGCTCTCCACACAGCCAAATCAGCTTCGGCCACCAAC 235
Query 241 AGGCCTCCCTCATCCATTAACACTCCGATACCGGAAGAAACGCTAAACCCTGAGAAAGAA 300
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 AGGCCTCCCTCGTCCATTAACACTCCGATACCGGAAGAAACGTTAAACCCTGAGAAAGAA 295
Query 301 GAATGTCCGCCGGAG-A-A-CAG------TACTAGTGTTAGTAGCCAGTTCTCGTTCGCT 351
||||||||||||||| | | ||| || |||||||||||| |||||||||||||||
Sbjct 296 GAATGTCCGCCGGAGAACACCAGCAACAATAGTAGTGTTAGTAGTCAGTTCTCGTTCGCT 355
Query 352 GCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATCGGAGGTGTCACCG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATCGGAGGTGTCACCG 415
Query 412 TTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACG 475
Query 472 GAGACAGACAGTCCTCCTATCTCCCCTTCCGATGAATTCGACGACGTCATCAAGTATTTT 531
||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||
Sbjct 476 GAGACAGACAGTCCTCCCATCTCCCCCTCCGATGACTTCGACGACGTCGTCAAGTATTTT 535
Query 532 CGCACCCACAACACCATACATCCTCTCTTCTCCGGCACAGGAGGCAGCCGTGGTACCACC 591
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 536 CGCACCCACAACACCATACAGCCTCTCTTCTCCGGCACAGGAGGCAGCCGTGGTACCACT 595
Query 592 GGAAATGGGAGCAATACCCCCATGGCTGGAACCGGTCCAAAGACAGTTGGTAGGTGGCTC 651
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 596 GGAAATGGTAGCAATACCCCCATGGCTGGAACCGGCCCAAAGACAGTTGGTAGGTGGCTC 655
Query 652 AAGGACCGTAAGGAAAAGAAGAAAGAAGAGACTAG-GACTCAGAATGCACAGGTTCACGC 710
||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 656 AAGGACCGTAAGGAAAAGAAGAAAGAAGAGACTAGAG-CTCAGAATGCACAGGTCCACGC 714
Query 711 AGCTGTTTCTGTTGCAGCGGTTGCATCTGCTGTGGCAGCTGTAGCAGCAGCCACAGCAGC 770
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 715 AGCTGTTTCTGTTGCAGCGGTTGCATCTGCCGTGGCAGCTGTTGCAGCAGCCACAGCTGC 774
Query 771 TTCTTCCCCTGGTAAGAACGAGCAGATGGCCAGAATCGATATGGCCATGGCTTCAGCGGC 830
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 TTCTTCACCTGGTAAAAACGAGCAGATGGCCAGAATCGATATGGCCATGGCTTCTGCGGC 834
Query 831 TGCTCTGGTGGCTGCTCAGTGTGTGGAGGCTGCAGAAATCATGGGAGCAGATAGGGATCA 890
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 TGCTCTGGTGGCTGCTCAGTGTGTGGAGGCTGCAGAAATCATGGGAGCAGAAAGGGATT- 893
Query 891 TT-TGACATCCGTGGTGAGCTCTGCCGTGAATGTTAAGTCCCATGACGATATTGTCACCC 949
|| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 894 TTCTGACATCCGTTGTGAGCTCTGCAGTGAATGTTAAGTCCCATGACGATATTGTCACCC 953
Query 950 TTACTGCAGCTGCTGCAACAGCTCTGCGAGGAGCAGCTACACTCAAGGCAAGAGCGCTTA 1009
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TTACTGCAGCTGCCGCAACAGCTCTGCGAGGAGCAGCTACACTCAAGGCAAGAGCGCTTA 1013
Query 1010 AGGAAGTATGGAACATAGCTGCAGTATTGCCAGCCGAGAAAGGGGCAAGTTCAGCGTTGT 1069
| |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 1014 AAGAAGTATGGAACATAGCTGCAGTATTACCAGCCGAGAAAGGAACAAGTTCAGCTTTGT 1073
Query 1070 GTGGACAGGTTGACACAAAGCATAGTGATAGCAGCTTTAGTGGAGAATTACCTGTGGCTG 1129
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1074 GTGGCCAGGTTGACACAAAGCACAGTGATAGCAGCTTTAGTGGAGAATTACCTGTTGCTG 1133
Query 1130 GGGAAGACTTCCTTGGCGTCTGTAACCAGGAATTACTAGCTAAAGGCACTGAGCTCCTCA 1189
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1134 GGGAAGACGTCCTAGGCGTCTGTAACCAGGAACTACTAGCTAAAGGCACTGAGCTCCTCA 1193
Query 1190 AACGAACTCGTGGAGGTGAACTCCACTGGAAGATTGTCTCTGTCTACATCAACAAAGCAG 1249
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AACGAACTCGTGGAGGTGATCTCCACTGGAAGATTGTCTCTGTCTACATCAACAAAGCAG 1253
Query 1250 GCCAAGCTGTGCTGAAAATGAAAAGTAAACACGTTGGAGGGACCTTCACAAAGAAGAAGA 1309
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GCCAAGTTGTGCTGAAAATGAAAAGTAAACACGTTGGAGGGACCTTCACAAAGAAGAAGA 1313
Query 1310 AACATATGGTGCTTGAAGTGAGAAAGGATATACCTGCATGGGCTGGCAGAGATCTTTTCA 1369
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1314 AACATATGGTGCTTGAAGTGAGAAAGGATATACCTGCATGGGCTGGCAGGGATCTTTTCA 1373
Query 1370 ACGGAGACAAGCATCACTACTTTGGCTTAAAGACAGAAACAAAGAGGGTCATTGAATTTG 1429
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1374 ACGGAGACAAGCATCATTACTTTGGCTTAAAGACGGAAACAAAGAGGGTCGTTGAATTTG 1433
Query 1430 AGTGCAGAAACCAAAGGGAATACGAGATATGGACTCAGGGCGTAT-CCAGGCTACTTGCC 1488
||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||
Sbjct 1434 AGTGCAGAAACCAAAGGGAATACGAGATATGGACTCAGGGCGTTTGCC-GCCTACTTGCC 1492
Query 1489 ATTGCTGCTGAGAAGAAGCAGAAAAGTTCCATGTCCAAATGGATGGCACCTTAACAACAT 1548
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 ATTGCAGCTGAGAGGAAGCAGAAAAGTTCCATGTCCAAATGGATGGCACCTTAACAACAT 1552
Query 1549 AAGCTAGGAAAGAAGTAGATGCTTTGTAGAACGAACTGCTTATGATAAGAATAGGTTTAA 1608
|| |||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||| ||
Sbjct 1553 AAACTAGGAGAGAAGTAGATGCTTTGTGGAACGAAGTGCTTATTATAAGAATAGGTTGAA 1612
Query 1609 ACATAATGGAGTAGAAGACAT 1629
|||||||||||||||||||||
Sbjct 1613 ACATAATGGAGTAGAAGACAT 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5