BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63310.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486839 jgi|Araly1|486839|fgenesh2_kg.5__2831__AT3G63310.1 1218 0.0
> Ahg486839 jgi|Araly1|486839|fgenesh2_kg.5__2831__AT3G63310.1
Length=793
Score = 1218 bits (659), Expect = 0.0
Identities = 722/753 (96%), Gaps = 2/753 (0%)
Strand=Plus/Plus
Query 72 CCGGCGTTGAC-aaa-aaaaaaCGAATCCGGAAGATGTGGAATCAGAAGCATGATTTGGA 129
||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 40 CCGGCGTTGACAAAACAAAAAACGAATTGGGAAGATGTGGAACCAGAAGCATGATTTGGA 99
Query 130 GTCGGCTCAGACGCCTCTCTACCCGATGATGTCGGAGAGCCCGGAGCTCCGATGGTCTTT 189
|||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 100 GTCGGCTCAGACGCCTCTGTACCCTATGATGTTGGAGAGCCCCGAGCTCCGATGGTCTTT 159
Query 190 CATCCGCAAGGTCTATTCCATCATCTCCATCCAGCTGCTCGTTACAATCGCCGTCGCTGC 249
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 160 CATCCGCAAGGTCTATTCAATCATCTCCATCCAGTTGCTCGTTACAATCGCCGTGGCTGC 219
Query 250 CACCGTCGTTAAGGTTCATTCTATTTCTGTATTCTTCACCACCACCACCGCCGGCTTCGC 309
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 220 CACCGTCGTGAAGGTTCATTCGATTTCTGTCTTCTTCACCACCACCACCGCCGGCTTCGC 279
Query 310 TCTCTACATACTTCTTATATTGACTCCATTGATCGTTATGTGTCCTTTGTATTACTATCA 369
||||||||||||| |||| || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 280 TCTCTACATACTTGTTATTTTCACTCCATTGATTGTTATGTGTCCATTGTATTACTATCA 339
Query 370 CCAGAAGCACCCTGTGAACTATCTGTTACTCGGGATTTTCACCGTCGCTCTTGCCTTTGC 429
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 340 CCAGAAGCACCCTGTGAACTATCTCTTGCTCGGCATTTTCACCGTCGCTCTTGCCTTTGC 399
Query 430 GGTTGGCTTGACCTGCGCCTTTACAAGCGGGAAGGTGATTCTGGAATCTGTGATTTTGAC 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GGTTGGCTTGACCTGCGCCTTTACAAGCGGGAAGGTGATTCTGGAATCTGTGATTTTGAC 459
Query 490 CGCTGTTGTGGTCATATCCCTCACTCTATACACTTTCTGGGCGGCCAAAAGAGGCCATGA 549
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 460 CTCTGTTGTGGTCATATCCCTCACTCTCTACACTTTCTGGGCTGCCAAAAGAGGCCATGA 519
Query 550 CTTCAACTTCCTCGGACCTTTCTTGTTCGGTGCTGTCATTGTCCTCATGGTGTTTTCCTT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CTTCAACTTCCTCGGACCTTTCTTGTTCGGTGCTGTCATTGTCCTCATGGTGTTTTCCTT 579
Query 610 CATCCAGATTCTCTTCCCTTTAGGAAAGATCTCTGTGATGATCTATGGTTGTTTGGCATC 669
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 580 CATCCAGATTCTCTTCCCTTTAGGAAAGATCTCAGTGATGATCTATGGTTGTTTGGCTTC 639
Query 670 CATCATCTTCTGTGGCTACATTGTATATGATACCGACAACTTGATCAAGAGGCACTCCTA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CATCATCTTCTGTGGCTACATTGTATATGATACCGACAACTTGATCAAGAGGCACTCCTA 699
Query 730 TGACGAGTACATCTGGGCTGCTGTTTCTCTTTATTTGGATGTCATTAATCTCTTCCTATC 789
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 700 TGACGAGTACATCTGGGCTGCAGTTTCTCTTTATTTGGATGTCATTAATCTCTTCCTATC 759
Query 790 TCTCCTCACTCTCTTAAGGGCTGTTGATAGTTA 822
||| ||||||||||||||||||| |||||||||
Sbjct 760 TCTGCTCACTCTCTTAAGGGCTGCTGATAGTTA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5