BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63320.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486840 jgi|Araly1|486840|fgenesh2_kg.5__2832__AT3G63320.1 1748 0.0
Ahg899328 jgi|Araly1|899328|Al_scaffold_0005_3294 953 0.0
> Ahg486840 jgi|Araly1|486840|fgenesh2_kg.5__2832__AT3G63320.1
Length=1263
Score = 1748 bits (946), Expect = 0.0
Identities = 1120/1201 (93%), Gaps = 23/1201 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGAGCTCCGGCAGTTTTCCGATCTCCCAATTGCCCTCTCTGGAATCTCCAGAATC 60
|||||||||||||||| || ||||||||||||||||| || |||| | | |||||
Sbjct 1 ATGGTGGAGCTCCGGCTGTGTTCCGATCTCCCAATTG-CC-CTCT----T-T--GGAATC 51
Query 61 GCCGATCCTTCTCCTCCCCCGCCAGTCGTTGCCATACGGCGGCGATTCAAGGGCGGAGGA 120
|||||||||| |||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 52 GCCGATCCTTATCCTCCTCCTCCAGTCGTTGCCATACGGCGGCGATTCAAGGTCGGAGGA 111
Query 121 AATACCAGGAGGATCGTCTTCTCTGTGCCCTTGATCTTCGCATTCCCTTTCCCGACTGGA 180
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 112 AATACCAGGAGGATCGTCTACTCTGCGCTCTTGATCTTCGCATTCCCTTTCCCGACTGGA 171
Query 181 ACACCAAAGGATGTTTTGGTTGGAATCGCAGCTGTCTTTGACGGCCACAGTGGTTCAGAA 240
||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 172 ACACCAAAGGATGTTGTGGTTGGAATCGCAGCTGTCTTTGACGGCCACAATGGTGCAGAA 231
Query 241 GCCAGTGAGATGGCTTCACAACTTTTGTTGGATTATTTTGCTCTCCACATTTACTTTCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 232 GCCAGTGAGATGGCTTCACAACTTTTGTTGGATTATTTTGCTCTCCACACTTACTTTCTC 291
Query 301 CTGGACGCAACATTTTCTAAGGAGCTCACTGGAAAGCTACCAAATTCACTCATGCATCTA 360
|| ||||| || ||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 292 CTCGACGCCACTTTTTCCAAGGAGCTCTCTGGAACGCTACCAAATTCACTCATGCATCTA 351
Query 361 TACGACCTCGATTCCCAAAGGTTCCAAGATTCATTGCCGCTC-A--------A-T-T-TT 408
||||||||| ||| |||||||||||||||||||| ||||||| | | | | ||
Sbjct 352 TACGACCTCAATTTCCAAAGGTTCCAAGATTCATCGCCGCTCAATTTTGGTGATTCTCTT 411
Query 409 CACTTGGATATTCTGAAAGAAGCCTTGCTCAGAGCTATCTACGACATTGATGCAACATTT 468
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 412 CACTTGGATATTCTGAAAGAAGCCTTGCTCAGAGCTATCCACGATATTGATGCAACATTT 471
Query 469 ACTAAGGAAGCATCT-ACTCGAAAGTTGGATTCAGGTTCAACGGCCACAATTGCACTTAT 527
||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 472 ACTAAGGAAGCATCTAAC-CGAAAGTTGGATTCAGGTTCAACGGCCACAGTTGCACTTAC 530
Query 528 CGCAGATGGTCAACTACTGGTTGCTAGCATCGGTGATTCTAAGGCACTTTTGTGTTCTGA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 531 CGCAGATGGTCAACTACTGGTTGCTAGCATCGGTGATTCTAAGGCACTTTTGTGTTCCGA 590
Query 588 AAGATATGAGACTCCTGAAGAGGCTAAAGCTACTTTAATAAAGTTGTACAGAGAGCGTAA 647
|| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 591 AAAATTTGAGACTCCTGAAGAGGCTAGAGCTACTTTAATAAAGTTTTACAGAGAGCGTAA 650
Query 648 GCGCAATCAAGACTCTTCCCCATCAAGGTTCTCTGATTTAAAGCTGGAACATCGCACTGG 707
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |||
Sbjct 651 GCGCAATCGAGACTCTTCCTCATCAAGGTTCTCTGATTTTAAGCTGGAACATCGCAATGG 710
Query 708 ACTCATGCGTTTTATTGCCAAAGAATTGACAAAGGACCATCACCCAGATAGAGAGGATGA 767
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 711 ACTCATACGTTTTATTGCCAAAGAATTGACTAAGGACCATCACCCAAATAGAGAGGATGA 770
Query 768 AATGCTCCGAGTGAAAGCTGCAGGAGGTTATGTCACCAAGTGGGCCGGTGTGCCAAGGGT 827
||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 771 AATGCTCCGCGTTAAAGCTGCAGGAGGTTATGTCACTGAGTGGGCCGGTGTGCCACGGGT 830
Query 828 GAATGGTCAGCTGGCTGTCTCCCGTTCGATTGGTGACCTTACTTATAGAAGTTACGGTGT 887
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 831 GAATGGTCAGCTGGCTGTCTCCCGTTCAATTGGTGACCTTACTTATAAAAGTTACGGTGT 890
Query 888 CATCTCTGCACCTGAGGTGATGGACTGGCAGCCTCTAGTGGCTAATGACAGCTACTTGGT 947
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 891 CATCTCTGCACCTGAGGTGATGGACTGGCAGCCTCTACTGGCTAATGACAGCTACTTGGT 950
Query 948 AGTGTCATCTGATGGTATCTTTGAGAAGTTAGAGGTGCAAGATGCATGCGATCGCCTGTG 1007
||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||||| |||||
Sbjct 951 AGTGTCATCTGATGGCATCTTTGAAAAGTTGGAGGTGCAAGATGTATGTGATCGTCTGTG 1010
Query 1008 GGAAGTAAAGAATCAAACTAGCTTTGGAGCAGGAGTGCCTTCATATTGCTCAATATCTTT 1067
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1011 GGAAGTAAAGAATCAAACTAGCTTTGGAGCAGGAGTGCCTTCATATTGCTCAGTTTCTTT 1070
Query 1068 GGCAGACTGCTTGGTTAATACTGCCTTTGAGAAGGGAAGTATGGATAATATGGCTGCAGT 1127
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GGCAGAATGCTTGGTTAATACTGCCTTTGAGAAGGGAAGTATGGATAATATGGCTGCAGT 1130
Query 1128 CGTGGTTCCTCTAAAATCCAATCTAGATTGGGAGAGCCAACCAAAAGAGCAATCTGTGGG 1187
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1131 CGTGGTTCCTCTAAAATCCAATCTAGATTGGCAGAGCCAACCAAAAGAGCAATCTGAGGG 1190
Query 1188 T 1188
|
Sbjct 1191 T 1191
Score = 78.7 bits (42), Expect = 1e-13
Identities = 49/52 (94%), Gaps = 2/52 (4%)
Strand=Plus/Plus
Query 1190 CTTCGGGATT-CAAGATGAAGAATACATATGCACTGCCATGTGAGTTTCTCT 1240
||||| |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1211 CTTCGAGATTGC-AGATGAAGAATACATATGCACTGCCATGTGAGTTTCTCT 1261
> Ahg899328 jgi|Araly1|899328|Al_scaffold_0005_3294
Length=1569
Score = 953 bits (516), Expect = 0.0
Identities = 677/754 (90%), Gaps = 14/754 (2%)
Strand=Plus/Plus
Query 407 TTCACTTGGATATTCTGAAAGAAGCCTTGCTCAGAGCTATCTACGACATTGATGCAACAT 466
|||||||||||||| |||| ||||| ||||| ||||| ||| | ||||||||||| ||||
Sbjct 575 TTCACTTGGATATTATGAAGGAAGCATTGCTGAGAGCAATCCATGACATTGATGCCACAT 634
Query 467 TTACTAAGGAAGCATCTACTCGAAAG-TTGGATTCAGGTTCAACGGCCACAATTGCACTT 525
|||||||||||||||| || |||||| || |||||||||||||||| ||||||||||||
Sbjct 635 TTACTAAGGAAGCATCAACCCGAAAGCTT-AATTCAGGTTCAACGGCTACAATTGCACTT 693
Query 526 ATCGCAGATGGTCAACTACTGGTTGCTAGCATCGGTGATTCTAAGGCACTTTTGTGTTCT 585
|| || |||||||||||| |||||||||| |||||||| || ||||||||| ||||||||
Sbjct 694 ATAGCTGATGGTCAACTAATGGTTGCTAGTATCGGTGACTCAAAGGCACTTCTGTGTTCT 753
Query 586 GAAAGATATGAGACTCCT-GAAGAGGCTAAAGCTACTTTAATAAAGTTGTACAGAGAGCG 644
|||| || ||||||| || ||||| |||| || |||||| | |||||||||||||||||
Sbjct 754 GAAAAATTTGAGACT-CTCGAAGAAGCTAGAGGTACTTTGGTGAAGTTGTACAGAGAGCG 812
Query 645 TAA-GCGCAATCAAGACTCTTCCCCATCAAGGTTCTCTGA-TTTAAAGCTGGAACATCGC 702
|| |||||||| || |||||| ||||||||||||||||| |||||| ||||||||| ||
Sbjct 813 -AAGGCGCAATCGAGGCTCTTCACCATCAAGGTTCTCTGACTTTAAA-CTGGAACATGGC 870
Query 703 ACTGGACTCA-TGCGTTTTATTGCCAAAGAATTGACAAAGGACCATCACCCAGATAGAGA 761
| |||||| | ||| ||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 871 AATGGACT-ACTGCATTTCATTGCCAAAGAATTGACAAAGGACCATCACCCAAATAGGGA 929
Query 762 GGATGAAATGCTCCGAG-TGAAAGCTGCAGGAGGTTATGTCACCA-AGTGGGCCGGTGTG 819
|||||||| | | || | || ||||||||||||||||||||| || ||||||||||||||
Sbjct 930 GGATGAAAAGATTCGTGTTG-AAGCTGCAGGAGGTTATGTCA-CAGAGTGGGCCGGTGTG 987
Query 820 CCAAGGGTGAATGGTCAGCTGGCTGTCTCCCGTTCGATTGGTGACCTTACTTATAGAAGT 879
||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 988 CCACGAGTGAATGGCCAGCTGACTGTCTCCCGTTCAATTGGTGACCTTACTTATAAAAGT 1047
Query 880 TACGGTGTCATCTCTGCACCTGAGGTGATGGACTGGCAGCCTCTAGTGGCTAATGACAGC 939
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1048 TACGGTGTCATCTCTGCACCTGAGGTGATGGACTGGCAGCCTCTACTGGCTAATGACAGC 1107
Query 940 TACTTGGTAGTGTCATCTGATGGTATCTTTGAGAAGTTAGAGGTGCAAGATGCATGCGAT 999
||||||||||| ||||| ||||| |||||||||||||| ||||||||||| | ||| |||
Sbjct 1108 TACTTGGTAGTATCATCGGATGGCATCTTTGAGAAGTTGGAGGTGCAAGAAGTATGTGAT 1167
Query 1000 CGCCTGTGGGAAGTAAAGAATCAAACTAGCTTTGGAGCAGGAGTGCCTTCATATTGCTCA 1059
|| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1168 CGTCTGTGGGAAGTAAACAATCAAACTAGCTCTGGAGCAGGAGTGCCTTCATACTGCTCA 1227
Query 1060 ATATCTTTGGCAGACTGCTTGGTTAATACTGCCTTTGAGAAGGGAAGTATGGATAATATG 1119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 ATTTCTTTGGCAGACTGCTTGGTTAATACTGCCTTTGAGAAGGGAAGTATGGATAATATG 1287
Query 1120 GCTGCAGTCGTGGTTCCTCTAAAATCCAATCTAG 1153
||||| || || |||||||||||||| |||||||
Sbjct 1288 GCTGCTGTTGTTGTTCCTCTAAAATCGAATCTAG 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5