BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63350.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349389 jgi|Araly1|349389|fgenesh1_pg.C_scaffold_5002781 826 0.0
> Ahg349389 jgi|Araly1|349389|fgenesh1_pg.C_scaffold_5002781
Length=894
Score = 826 bits (447), Expect = 0.0
Identities = 541/586 (92%), Gaps = 8/586 (1%)
Strand=Plus/Plus
Query 262 GGATTCAGAAAGATCGAGGCAGAGAGATGGGAGTTTATGAATGAAGGTTTCTTGATGGGT 321
|||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 310 GGATTCAGGAAGATCGAGGCAGAGCGATGGGAGTTTATGAATGAAGGTTTCTCGATGGGT 369
Query 322 CAGAGGGACCTTCTCAAAAGCATCAAGCGACGAACCTCCTCTTCTTCCCCTCCTTCGCTT 381
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 370 CAGAGGGACCTTCTCAAAAGCATCAAGCGACGAACCTCATCCTCTTCCCCTCCTACGCTT 429
Query 382 AACTACTCTCAGTCTCAGCCCGA-GGCTCATGACCCAGGCGTCGAGCTTCCGCAGCTCCG 440
||| | || | ||| ||||| || | |||||||| |||||||||||||||||||||
Sbjct 430 AAC--CACT-A---TCAACCCGATGG-TGATGACCCAAGCGTCGAGCTTCCGCAGCTCCA 482
Query 441 AGAAGAGAGGCATGTCCTAATGATGGAGATCTCGACGCTCAGACAGGAGGAGCAAAGAGC 500
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AGAAGAGAGGCATGTCGTAATGATGGAGATCTCGACGCTCAGACAGGAGGAGCAAAGAGC 542
Query 501 GAGAGGCTACGTCCAAGCCATGGAGCAGAGGATTAATGGAGCAGAGAAGAAACAGAGGCA 560
|||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 543 GAGAGGCTACATCCAAGCCATGGAACAGAGGATTAATGGAGCAGAGATGAAACAGAGGCA 602
Query 561 TATGATGTCCTTCTTGAGGCGTGCGGTGGAGAATCCTTCCCTTCTGCAGCAGATTTTCGA 620
|||||||||||||||||||||||| ||| || | ||||| |||||||||||| | |||||
Sbjct 603 TATGATGTCCTTCTTGAGGCGTGCAGTGCAGGACCCTTCGCTTCTGCAGCAGCTATTCGA 662
Query 621 GCAGAAGAGAGACCGAGAGGAGGCCGCGATGATTGATCAGGCTGGCTTGATCAAAATGGA 680
|||||||| ||||| ||||||||| ||||| |||| ||||||||| || |||||| |||
Sbjct 663 GCAGAAGAAAGACCAAGAGGAGGCTACGATGTTTGAACAGGCTGGCCTGGTCAAAACGGA 722
Query 681 AGAGGTGGAGCACCTGTCGGAGCTGGAGGCTCTGGCGCTTGAGATGCAAGGATATGGACG 740
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AGCGGTGGAGCACCTGTCGGAGCTGGAGGCTCTGGCGCTTGAGATGCAAGGATATGGACG 782
Query 741 GCAACGGACTGATGGTGTGGAGAGGGAGCTTGACGACGGGTTTTGGGAAGAGTTACTCAT 800
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 783 GCAACGGGCTGATGGTGTGGAGAGGGAGCTTGACGACGGGTTTTGGGAAGAGTTACTGAT 842
Query 801 GAACAATGAAAACTCCGACGAAGAAGAGGCGAATGTGAAGCAAGAT 846
|||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 843 GAACAACGACAACTCCGAGGAAGAAGAGGCGAATGTGAAGCAAGAT 888
Score = 449 bits (243), Expect = 1e-125
Identities = 255/261 (98%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1 ATGGACCCGTCGTCAAGCTCCAGAGCACGGTCAATGCCACCGCCGGTGCCTATGGAGGGA 60
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 1 ATGGACCCGTCGTCAAGCTCCAGAGCACGGTCAATGCCGCCTCCAGTGCCTATGGAGGGA 60
Query 61 TTGCAGGAAGCAGGGCCTTCTCCTTTTCTAACAAAGACGTTCGAGATGGTTGGTGATCCA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCAGGAAGCAGGGCCTTCTCCGTTTCTAACAAAGACGTTCGAGATGGTTGGTGATCCA 120
Query 121 AACACAAACCACATTGTGTCTTGGAACAGGGGAGGCATCAGTTTTGTCGTGTGGGATCCA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACACCAACCACATTGTGTCTTGGAACAGGGGAGGCATCAGTTTTGTCGTGTGGGATCCA 180
Query 181 CATTCCTTCTCGGCCACTATTCTGCCTCTATACTTCAAGCACAACAACTTCTCCAGCTTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATTCCTTCTCGGCCACTATTCTGCCTCTATACTTCAAGCACAACAACTTCTCCAGCTTT 240
Query 241 GTCAGACAACTTAACACTTAT 261
||||||||||| |||||||||
Sbjct 241 GTCAGACAACTCAACACTTAT 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5