BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63360.1
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324760 jgi|Araly1|324760|fgenesh1_pm.C_scaffold_5002304 405 7e-113
> Ahg324760 jgi|Araly1|324760|fgenesh1_pm.C_scaffold_5002304
Length=258
Score = 405 bits (219), Expect = 7e-113
Identities = 245/258 (95%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAGACGATCAGCTTCTCAGCCATAATCCTCGTATTCTTATTGGTTTCCACAGGA 60
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAGACGATCAGCTTCTCAGCGATTATCCTCGTATTCTTATTGGTTTCCACAGGA 60
Query 61 TTGATGAAGCAAGGAGACGCGCAAGCGCAAAAGTGTGAGTGGGAGTGCAAGCTTCTACCA 120
| ||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||
Sbjct 61 CTAATGGAGCAAGGAGACGCTCAAGCGCAAAGGTGTCAGTGGGAGTGCAAGCTTCTACCA 120
Query 121 AACTTCCCGTGCTGGTTAAAAGGTGCGGGAGAAGGCCTTTGCGACAACTTGTGCAAGTAC 180
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AACTTCCCTTGCTGGTTAAAAGGTGCGGGAGAAGGCCTCTGCGACAACTTGTGCAAGTAC 180
Query 181 GAAGGAGCCATTAGCGGCGTTTGCGTCTCTGACCCCCACCGCTGCCTCTGTCGCAATCGC 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GAAGGTGCCATTAGCGGCGTTTGCGTCTCTGACCCCCACCGCTGCCTCTGTCGCAATCCC 240
Query 241 AAGCCCGGCTGCTCCTGA 258
| ||||||||||||||||
Sbjct 241 AGGCCCGGCTGCTCCTGA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8974241335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5