BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63370.1
Length=3004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324761 jgi|Araly1|324761|fgenesh1_pm.C_scaffold_5002305 3395 0.0
> Ahg324761 jgi|Araly1|324761|fgenesh1_pm.C_scaffold_5002305
Length=3018
Score = 3395 bits (1838), Expect = 0.0
Identities = 2078/2196 (95%), Gaps = 7/2196 (0%)
Strand=Plus/Plus
Query 409 AGAGAAAGTGTTTGACGAAATGCCTGACAGAACTGCCTTTGCGTGGAATACCATGATTGG 468
||||||||||||||||||||||| |||||||||||||||||| |||||| | |||| ||
Sbjct 345 AGAGAAAGTGTTTGACGAAATGCGTGACAGAACTGCCTTTGCCTGGAATGCGTTGATCGG 404
Query 469 AGCTTATGTTTCGAATGGTGAACCTGCTTCCGCTCT-TGCTCTCTACTGGAATATGCGTG 527
||| ||||||||||||| |||||||||||||||||| | | ||||| ||||||||||||
Sbjct 405 AGCCTATGTTTCGAATGCTGAACCTGCTTCCGCTCTCT-TTATCTACCGGAATATGCGTG 463
Query 528 TGGAGGGCGTTCCTCTCGGTCTTTCCTCTTTTCCCGCCTTGCTTAAAGCCTGCGCCAAAC 587
|||||||||||||||||| ||||| ||||||||| | ||||||||||||||||| |||||
Sbjct 464 TGGAGGGCGTTCCTCTCGATCTTTACTCTTTTCCTGTCTTGCTTAAAGCCTGCGGCAAAC 523
Query 588 TTAGAGATATCCGAAGTGGCTCTGAGCTTCATTCTCTCCTCGTTAAACTTGGCTACCATT 647
|| |||| ||| | |||||| |||||||||||| | | |||||||||||||||| | |||
Sbjct 524 TTCGAGACATCAGGAGTGGCACTGAGCTTCATTGTATGCTCGTTAAACTTGGCTTCAATT 583
Query 648 CAACTGGTTTTATCGTCAATGCGTTGGTTTCCATGTATGCTAAGAAC-GATGACCTTAGC 706
|||| ||||||||||||||||||||||||||||||||||||||| || ||| |||| |||
Sbjct 584 CAACAGGTTTTATCGTCAATGCGTTGGTTTCCATGTATGCTAAG-ACTGATCACCTAAGC 642
Query 707 GCTGCAAGGCGTCTGTTTGACGGATTCCAAGAGAAAGGAGATGCTGTTCTCTGGAATTCT 766
|| || |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 643 GCAGCTAGGCGTCTCTTTGACGGATCCCAAGAGAAAGGAGATGCTGTTCTCTGGAATTCT 702
Query 767 ATTTTGTCTTCATATTCCACGTCTGGGAAATCTCTCGAGACTTTAGAATTATTCAGAGAA 826
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 703 ATTTTGTCTTCATATTCCACGTCTGGGAAATCTCTGGAGACATTACAATTATTCAGAGAA 762
Query 827 ATGCACATGACTGGCCCTGCCCCCAACAGCTACACCATTGTTTCTGCTCTCACAGCCTGT 886
||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 763 ATGCAAATGACTGGTCCTGCCTCCAACAGCTACACTATTGTTTCTGCTCTCACAGCCTGT 822
Query 887 GACGGTTTTTCATATGCAAAGCTAGGGAAAGAGATCCACGCTTCTGTCCTCAAATCATCA 946
|| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 823 GAAGGTTTTTCATATGCAAAGCTAGGGAAAGAGATCCACGCTGCTGTCCT-GAA--ATCA 879
Query 947 ACTCACTCTTCTGAATTATATGTGTGCAACGCCTTGATTGCAATGTATACCAGGTGTGGT 1006
|||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 880 ACTCACTCTTTTGAAGTATATGTGTGCAACGCCTTGATTGCTATGTATGCCAGGTGTGGT 939
Query 1007 AAAATGCCTCAGGCAGAAAGGATCCTTCGTCAGATGAATAACGCTGATGTTGTCACATGG 1066
||||||| | |||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 940 AAAATGCTTGAGGCAGGAAGGATCCTTCGTCTGATGAATAACGCTGACGTTGTCACATGG 999
Query 1067 AATTCTCTGATTAAGGGATATGTACAGAATCTCATGTACAAGGAGGCTTTAGAGTTCTTT 1126
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1000 AATTCTCTGATTAAGGGATATGTACAGAATCTCATGTACAAGGAGGCATTACAGTTCTTT 1059
Query 1127 TCTGATATGATCGCTGCTGGCCACAAATCCGACGAGGTTTCAATGACCAGCATCATTGCA 1186
| ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 1060 TGTGATATGATCGCTGCTGGCCACAAACCCGACGAGGTTTCATTGACCAGTGTCATTGCA 1119
Query 1187 GCGTCAGGAAGATTAAGCAATCTCTTGGCAGGAATGGAATTGCACGCTTACGTGATTAAA 1246
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1120 GCGTCAGGAAGATTAAGCAATCTGTTGGCAGGAATGGAATTGCACGCTTACGTGATTAAA 1179
Query 1247 CATGGCTGGGATTCTAATTTGCAGGTTGGGAATACGTTGATTGATATGTATTCAAAGTGC 1306
|||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1180 CATGGCTGGGATTCCAATTTGCTGGTTGGGAATACGTTGATAGATATGTATTCAAAGTGC 1239
Query 1307 AACCTCACATGTTACATGGGCCGTGCGTTTCTTAGGATGCATGACAAAGATCTTATTTCA 1366
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1240 AACCTCACATGTTACATGGGCCGTGCGTTTCTTATGATGCATGAAAAAGATCTTATTTCA 1299
Query 1367 TGGACTACGGTCATTGCCGGTTATGCCCAGAATGATTGTCATGTAGAGGCCTTAGAACTC 1426
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1300 TGGACTACAATCATTGCTGGTTATGCCCTGAATGATTGTCATGTAGAGGCCTTACAACTC 1359
Query 1427 TTCCGGGATGTTGCTAAGAAAAGGATGGAGATTGATGAAATGATCCTGGGAAGCATCCTT 1486
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1360 TTCCGGGATGTTGCTAAGAAAAGGATGGAGATTGATGAAATGATGCTGGGAAGCATCCTT 1419
Query 1487 CGAGCTTCTAGTGTACTGAAATCCATGCTCATTGTCAAAGAAATCCATTGTCACATTTTG 1546
||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1420 CGAGCTTGTAGTGTGCTGAAATCCATGCTCATTGTCAAAGAAATTCATTGTCACATTTTG 1479
Query 1547 AGAAAAGGTTTACTTGATACTGTGATACAGAATGAGTTGGTAGATGTCTACGGAAAATGC 1606
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1480 AGAAAAGGTTTAATTGATACTGTGATACAGAATGAGTTGGTAGATGTTTACGGAAAATGC 1539
Query 1607 AGGAACATGGGCTATGCTACTCGAGTATTTGAATCAATTAAAGGTAAAGATGTTGTCTCT 1666
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1540 AGGAACATGGGCTATGCTTCCCGAGTATTTGAATCAATCAAAGGTAAAGATGTTGTCTCT 1599
Query 1667 TGGACAAGCATGATTTCGTCTAGTGCTCTTAATGGTAATGAAAGCGAGGCTGTTGAACTC 1726
||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1600 TGGACGAGCATGATTTCGTCTAGTGCTCTTAATGGTAACGAAAATGAGGCTGTTGAACTC 1659
Query 1727 TTTCGACGCATGGTTGAAACTGGTTTGTCAGCTGATTCTGTAGCATTGTTGTGTATACTG 1786
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1660 TTTCGACGCATGGCTGAAACTGGTTTGTTAGCTGATTCTGTAGCATTGTTGTGTATACTG 1719
Query 1787 TCAGCTGCAGCAAGTTTATCTGCACTCAATAAAGGGAGAGAAATTCATTGCTACTTACTC 1846
||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||
Sbjct 1720 TCAGCTGCAGCAAGTTTATCTGCCCTCAAGAAAGGGAGGGAAATTCATGGCTACTTACTC 1779
Query 1847 CGAAAGGGGTTTTGCCTAGAGGGGTCCATTGCAGTTGCAGTTGTTGACATGTATGCATGC 1906
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 CGGAAGGGTTTTTGCCTAGAGGGGTCCATTGCAGTTGCAGTTGTTGACATGTATGCATGC 1839
Query 1907 TGTGGAGATTTACAGAGTGCAAAGGCTGTATTTGACCGGATAGAAAGGAAAGGTTTGCTG 1966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 TGTGGAGATTTACAGAGTGCAAAGGCTGTATTTGACCGGATAGAAAGGAAAGGTTTGCTA 1899
Query 1967 CAATACACAAGTATGATCAATGCATATGGAATGCATGGCTGCGGAAAAGCAGCTGTTGAG 2026
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1900 CAATACACAAGTATGATCAATGCATATGGAATGCACGGCTGCGGAAAAGCATCTGTTGAG 1959
Query 2027 TTGTTCGATAAAATGAGGCACGAAAACGTCTCGCCCGATCACATTTCATTTCTGGCACTT 2086
|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1960 TTGTTCAATAAAATGAGGCATGAAAACGTCTCACCCGATCACATTTCATTTCTGGCACTT 2019
Query 2087 CTTTATGCGTGCAGCCATGCAGGTCTGCTTGACGAGGGTAGAGGGTTTCTCAAGATCATG 2146
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2020 CTTTATGCGTGCAGCCATGCAGGTCTGCTTGACGAGGGTAGAAGATTTCTCAAGATCATG 2079
Query 2147 GAACATGAGTATGAATTGGAACCATGGCCTGAACATTACGTGTGTCTGGTTGACATGCTG 2206
|||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2080 GAACTTGAATATAAATTGGAACCATGGCCTGAACATTACGTGTGTCTGGTTGACATGTTG 2139
Query 2207 GGTCGTGCAAATTGTGTAGTGGAAGCCTTTGAATTCGTTAAAATGATGAAAACAGAACCG 2266
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2140 GGTCGTGCAAATTGTGTAGTGGAAGCCTTTGAATTCGTCAAAATGATGAAAACAGAACCA 2199
Query 2267 ACTGCAGAAGTCTGGTGTGCACTCCTTGCGGCATGCCGATCTCACTCAGAGAAAGAAATT 2326
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2200 ACTACAGAAGTCTGGTGTGCACTCCTTGCGGCATGCCGATCTCACTCAGAGAAAGAAATT 2259
Query 2327 GGAGAGATTGCTGCTCAGAGGCTCCTTGAGCTAGAACCTAAGAATCCGGGAAATCTTGTG 2386
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2260 GGAGAGATAGCTGCTCAGAGGCTTCTTGAGCTAGAACCTAAGAATCCGGGAAATCTTGTG 2319
Query 2387 CTTGTATCTAATGTCTTTGCTGAACAAGGAAGATGGAACGATGTAGAAAAAGTGAGGGCA 2446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 CTTGTATCTAATGTCTTTGCTGAACAAGGAAGATGGAACGATGTAGAAAAAGTGAGGGCA 2379
Query 2447 AAAATGAAAGCAAGTGGAATGGAGAAACACCCTGGATGTAGTTGGATTGAGATGGACGGC 2506
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2380 AAAATGAAAGCAAGTGGAATGGAGAAACAACCTGGATGTAGTTGGATTGAGATGGACGGC 2439
Query 2507 AAGGTTCATAAATTTACAGCCAGAGACAAGTCTCACCCAGAGAGCAAAGAGATATATGAG 2566
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 2440 AAGGTTCATAAATTTACAGCAAGAGACAAGTCTCACCCAGAGACCAAAGAGATATATGAG 2499
Query 2567 AAATTGTCCGAGGTTACTAGGAAGTTGGAGAGGGAA 2602
||||||||||||||||||||||||||||||||||||
Sbjct 2500 AAATTGTCCGAGGTTACTAGGAAGTTGGAGAGGGAA 2535
Score = 243 bits (131), Expect = 8e-63
Identities = 233/279 (84%), Gaps = 20/279 (7%)
Strand=Plus/Plus
Query 40 TAACATGATGTACTCTGCTTCGGCGATTTCGTTTCCAAGGGTTCGTCTGCATTGTAGTAT 99
||||| |||||||||||||||||| |||||||| |||| | ||||||| |||||||||||
Sbjct 69 TAACACGATGTACTCTGCTTCGGCCATTTCGTTACCAACGTTTCGTCTCCATTGTAGTAT 128
Query 100 TCCGACAGAGC---CATCCTGCCG----GAG--AAACC-CATTCCGACAGA-GCA---AT 145
||||||||||| |||| ||||| || | || |||| |||| | || ||
Sbjct 129 TCCGACAGAGCTATCATCATGCCGTCCCAAGTTGAGCCGAATTCAGACAAACCCATCCAT 188
Query 146 C----AGCCCGTCCAAGTCCCTTCTCCGAAGCTCGCTTGTTTCGACGGAGTCCT-AACTG 200
| ||||||||||||||||||||||||||||||||| |||||| |||| ||| || ||
Sbjct 189 CGGGAAGCCCGTCCAAGTCCCTTCTCCGAAGCTCGCTTCTTTCGATGGAGGCCTTAA-TG 247
Query 201 AAGCTTTTCAACGGCTGGACGTCAGCGAAAACAACTCTCCAGTCGAAGCCTTTGCCTACG 260
|||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||
Sbjct 248 AAGCTTTTCAACGGCTGGACGTCAACGGAAACAACTCTCCAATCGAAGCCTATGCCTACC 307
Query 261 TTCTCGAGCTTTGTGGTAAACGTAGAGCTGTCTCACAAG 299
|||||||||||||||||||| | |||||| |||| ||||
Sbjct 308 TTCTCGAGCTTTGTGGTAAAAGCAGAGCTCTCTCTCAAG 346
Score = 137 bits (74), Expect = 4e-31
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 2809 TGTGGTCATTTAGATACATGGAGTCAAACTAAGAATGGACCTTGGCGAAAGCTTCTTCAC 2868
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2794 TGTGGTCTTTTAGATACATGGAGTCAAACTAAGAATGGACCTTGGCGAAAGCTTCTTCAT 2853
Query 2869 GGTCAAGATTTAAAATCAGG 2888
||||||||||||||||||||
Sbjct 2854 GGTCAAGATTTAAAATCAGG 2873
Score = 108 bits (58), Expect = 3e-22
Identities = 62/64 (97%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 2888 GCTTCTTTAATTCGTGGTGTCTCTCTCCTTTTTACCCAACCATCTCTTAAAATTTTTAAC 2947
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 2936 GCTTCTTTAATTCGTGGTGTCTCTCTCCTTTTTACCCAACCATCTCTTTAAATTTTCAAC 2995
Query 2948 ATCT 2951
||||
Sbjct 2996 ATCT 2999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113432749610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5