BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G63390.1

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324763 jgi|Araly1|324763|fgenesh1_pm.C_scaffold_5002307           682    0.0  


> Ahg324763 jgi|Araly1|324763|fgenesh1_pm.C_scaffold_5002307
Length=522

 Score =  682 bits (369),  Expect = 0.0
 Identities = 478/527 (91%), Gaps = 21/527 (4%)
 Strand=Plus/Plus

Query  26   ATGATGGAAGATGACGATGATTTCTCGGCGGCTGCGACTACCGTTGTGTTCGACCGTCCG  85
            |||||||| |||   ||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct  1    ATGATGGACGAT---GATGATTACTCGGCGGCTGCGACTACCGTCGTCTTCGACCGTCCG  57

Query  86   ATTCCGCTGCTCCGGGGACCTGTACCCTCCGGTGGTTCTTATGTTCTAGCTTTCCGATCA  145
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| 
Sbjct  58   ATTCCGCTGCTCCGGGGACCTGTACCCTCCGGTGGTTCATACGTTCTAGCTTTCCGATCC  117

Query  146  CTGGATTCATGGTCAGCCGCTTTCAAGCGTTGCGAAACCCTAATCAAGGACCAGTGCGAG  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  118  CTGGATTCATGGTCAGCCGCTTTCAAGCGTTGCGAAACCCTAATCAAGGACCAGTGCCAG  177

Query  206  GAAGGTGCTAAAATTGGGTGCGCCGTCTCCGCCTCCAACAACTGTAAGCCGCCGTGGTGG  265
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  GAAGGTGCTAGAATTGGGTGCGCCGTCTCCGCCTCCAACAACTGTAAGCCGCCGTGGTGG  237

Query  266  CGGGGATCTGGTGGTGACATGAGGGAACGAGAGAAGTGCGAAGAGCGGGAATTCGAGGGC  325
            ||||| || ||||   |||||||||| || || ||||||||||||||||||||| ||| |
Sbjct  238  CGGGGCTCCGGTG---ACATGAGGGAGCGGGACAAGTGCGAAGAGCGGGAATTCCAGG-C  293

Query  326  -TGTGTGGCTGCCGCCAAGGGCAAGTGCGCTGCTTTCGCCAAAGACAAGTGCTCTGGTGC  384
             |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  ATGTGTGGCTGCCTCCATGGGCAAGTGCGCTGCTTTCGCCAAAGACAAGTGCTCTGGTGC  353

Query  385  CTTTTTAGATGCGCGAATCGCCAAGGACAAGGAGGTTGAGGGATTGGTGTGGCTAGCTTC  444
             |||||||||||||||||| |||||||   |    |||||||||||||||| ||||||||
Sbjct  354  GTTTTTAGATGCGCGAATCTCCAAGGA---GC---TTGAGGGATTGGTGTGCCTAGCTTC  407

Query  445  AATGCCGGAGGAAAGCAGGTGGAGGGATCTCATGGGGCTTGGTGGTTCACTGCGTCTGCA  504
            |||||||||| | |||||||||||||||||||||||| |||||  | |||||| ||||||
Sbjct  408  AATGCCGGAGCACAGCAGGTGGAGGGATCTCATGGGGATTGGT--T-CACTGCTTCTGCA  464

Query  505  CACCAACAACTGCTGCTGCACAGCCAGGGATCTTCTTCTTAAACCAT  551
            ||||| ||||||||||   || |||||||||||||||| ||| ||||
Sbjct  465  CACCACCAACTGCTGC---ACTGCCAGGGATCTTCTTCGTAA-CCAT  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29659629426


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5