BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63400.1
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324764 jgi|Araly1|324764|fgenesh1_pm.C_scaffold_5002308 1519 0.0
> Ahg324764 jgi|Araly1|324764|fgenesh1_pm.C_scaffold_5002308
Length=1632
Score = 1519 bits (822), Expect = 0.0
Identities = 1035/1129 (92%), Gaps = 50/1129 (4%)
Strand=Plus/Plus
Query 148 ATGACTAAAAAGAAGAATCCTAATGTTTTCTTGGATGTATCAATTGGTGGGGATCCCGTT 207
|||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGAGTAAAAAAAAGAATCCTAATGTTTTCTTGGATGTCTCTATTGGTGGGGATCCCGTT 60
Query 208 CAACGGATTGTCATTGAGCTTTTTGCTGATGTTGTCCCCAAGACAGCGGAAAACTTCCGT 267
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CAACGGATTGTCATTGAGCTTTTTGCTGATGTTGTCCCCAAGACAGCCGAAAACTTCCGT 120
Query 268 GCCCTCTGCACAGGTGAGGCGGGCGTTGGAAAGTCCACTGGGAAGCCTCTACATTTCAAA 327
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 121 GCCCTCTGCACAGGTGAGGCGGGAGTTGGAAAGGCCACTGGGAAGCCTCTACATTTCAAA 180
Query 328 GGATCATCTTTCCATCGGGTTATCAAAGGATTCATGGCTCAGGGTGGTGATTTTTCCAAT 387
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GGATCATCTTTCCATCGAGTTATCAAAGGATTCATGGCTCAGGGTGGTGACTTTTCCAAT 240
Query 388 GGGAATGGCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAGATGAGAACTTTAGA 447
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GGAAATGGCACTGGTGGGGAGAGCATCTATGGTGGGAAGTTTTCAGATGAGAATTTTAGA 300
Query 448 TTGGACCATGATGGAGCTGGAGTCCTTTCAATGGCAAATTGTGGCCCAAATACCAACGGG 507
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGATCATGATGGAGCTGGAGTCCTTTCAATGGCAAATTGTGGCCCAAATACCAACGGG 360
Query 508 TCCCAATTTTTTATACTTTTTAAACGCCAACCACATCTTGATGGGAAGCATGTTGTATTT 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCCAATTTTTTATACTTTTTAAACGCCAACCACATCTTGATGGGAAGCATGTTGTATTT 420
Query 568 GGCAAAGTCGTTGAAGGGATGGCAGTAATCAAGAAAATGGAACTTGTGGGGACGAGTGAT 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGCAAAGTCGTTGAGGGGATGGCAGTAATCAAGAAAATGGAACTTGTGGGGACGAGTGAT 480
Query 628 GGGAAACCTACTAGCCCAGTCAAAATAATAGACTGTGGTGAAACGTCTCAGATAAGAGCA 687
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 481 GGGAAACCTACTAGCCCAGTTAAAATAATCGACTGTGGCGAAACGTCTCAGATAAGAGCA 540
Query 688 CATGATGCTGCTGAAAGAGAAAAAGGGAAATCGAAAAAATCAAACAAGAACTTTTCTCCT 747
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 541 CATGATGCTGCTGAAAGAGAAAAAGGGAAATCGAAAAAATCAAACAAGGGCCTTTCTTCT 600
Query 748 GGTGACGTATCTGACCGTGAAGCTAAGGAGACACGCAAAAAAGAATCTAACGAGAAAAGG 807
|||||| ||| | ||| | | ||||||||||||| || |||||||||
Sbjct 601 GGTGACATAT-T-----TGA--C--------C--GCAAAAAAGAATCAAAGGAGAAAAGG 642
Query 808 ATAAAACGAAAAAGAAGATACTCTTCGTCAGATTCATATAGCTCAAGTTCCGACTCAGAT 867
||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 643 ATAAAGCGAAAAAGAATATACTCTTCGTCGGATTCATATAGCTCAAGTTCTGACTCAGAT 702
Query 868 TCAGATTCGGAATCAGAAGCATATTCATCTTCCTCCTATGAGTCTAGTTCTTCCAGTGAT 927
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 703 TCAGATTCGGAATCAGAAACATATTCATCCTCCTCCTATGAGTCTAGTTCTTCCAGTGAT 762
Query 928 GGGAAGCATAGGAAGAGGAAGTCAACAACA-AGACACAAAGGCCGACGCGGGGAAAGAAA 986
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 763 GGGAAGCATAGGAAGAGGAAGTCAACAA-AGAGACACAAAGGCCGACGCGGGGAAAGAAA 821
Query 987 GAGTAAAGGACGAAGCGGGAAAAAGAAAGCTCGGCCAGATAGAAAACC-------A-A-G 1037
|| ||||||||||| |||||||||||||||||||| ||||||| |||| | | |
Sbjct 822 GATTAAAGGACGAAACGGGAAAAAGAAAGCTCGGCGAGATAGACAACCTCGGCGCAGAAG 881
Query 1038 CACGAATAGTTCAAGTGACACGGAGAGTAGCAGCAGTTCTGATGATGAGAAAGTGGGCCA 1097
|||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 882 CACGGATAGTTTAAGTGACACGGAGAGTAGCAGCAGTTCTGATGATGAGAAAG----CCA 937
Query 1098 CAAAGCCATAAAGTCAGTGAAAGTTGATAACGCTGATCAACACGCCAACTTGGATGACTC 1157
| | | || | ||| | | | | ||||||||||| |||| |||||||||||||
Sbjct 938 C----C-A-AA-G-CAG--A---T--A-A-CGCTGATCAACGCGCCGACTTGGATGACTC 980
Query 1158 AGTGAAATCAAGGAGCAGGAGCCCAATTCGTAGGAGAAACCAAAACAGCAGGAGCAAAAG 1217
| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 981 ATTGAAATCAAGGAGCAGGAGCCCAATTCGTAGGACTAACCAAAACAGCAGAAGCAAAAG 1040
Query 1218 TCCTAGTAGGAGCCCTGTGAGAGTTCTTGGAAATGGAAACAGAAGTCCT 1266
||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 1041 TCCTAGTAGGAGCCCTGTGAGAGATCTAGGAAATGGAAGCAGAAGTCCT 1089
Score = 985 bits (533), Expect = 0.0
Identities = 584/608 (96%), Gaps = 6/608 (1%)
Strand=Plus/Plus
Query 1253 GAAACAGAAGTCCTAGTAGGAGCCCTGTGAGAGATCTTGGAAATGGAAGCAGAAGTCCTC 1312
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1031 GAAGCAAAAGTCCTAGTAGGAGCCCTGTGAGAGATCTAGGAAATGGAAGCAGAAGTCCTC 1090
Query 1313 GTGAGAAGCCAACAGAGGAAACTGTGGGGAAATCTTTCAGAAGCCCATCTCCAAGTGGTG 1372
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1091 ATGAGAAGCCAACAGAGGGAACTGTGGGGAAATCTTCCAGAAGCCCATCTCCAAGTGGTG 1150
Query 1373 TGCCCAAGCGCATCCGAAAGGGGCGTGGGTTCACCGAACGCTATTCCTTTGCTCGGAAGT 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TGCCCAAGCGCATCCGAAAGGGGCGTGGGTTCACCGAACGCTATTCCTTTGCTCGGAAGT 1210
Query 1433 ACCATACTCCTTCTCCTGAGCGTTCTCCTCCTAGACATTGGCCTGACAGAAGAAACTTTC 1492
||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1211 ACCATACGCCTTCTCCTGAGCGTTCTCCTCCTAGACATTGGCCTGACAGGAGAAGCTTTC 1270
Query 1493 AGGATAGGAACAGGGATAGGTATCCGAGCAACAGAAGTTACTCTGAGCGCTCACCGAGGG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 AGGATAGGAACAGGGATAGGTATCCGAGCAACAGAAGTTACTCTGAGCGCTCACCGAGGG 1330
Query 1553 GACGCTTTAGAAGCCCACCCAGAAGAAGGAGCCCTCCAAGGTACAACCGGAGGAGAAGGA 1612
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GACGCTTTAGAAGCCCAACCAGAAGAAGGAGCCCTCCAAGGTACAACCGGAGGAGAAGGA 1390
Query 1613 GCACTTCTCGGAGTCCAGATGGGTACCGTAGACGATTGAGAGACGGAAGCAGGAGCCAGA 1672
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1391 GCACTTCTCGGAGTCCAGATGGGTACCGTAGACGCTTGAGAGACGGAAGCAGGAGCCAGA 1450
Query 1673 GTCCGAGGCATCGTAGCCGTAGCCAGAGCCCTAGAAAGAGGCAGCCAATTAGCCAAGACC 1732
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 GTCCAAGGCATC--A----TAGCCAGAGCCCTAGAAAGAGGCAGCCAATTAGCCAAGACC 1504
Query 1733 TGAAATCCCGTCTCGGGCCACAGAGATCCCCCATCAGAGGAGGACGCACCTCTCCTGCAG 1792
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TTAAATCCCGTCTCGGGCCACAGAGATCCCCCATCAGAGGAGGACGCACCTCTCCTGCAG 1564
Query 1793 AATCACTCAGCCCTTCTCACTCACCTTCTCCACCAGGAAAGAGAGGTCTGGTTAGCTATG 1852
||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 1565 GATCGCTCAGCCCTTCTCACTCATCATCTCCACCAGGACAGAGAGGTCTGGTTAGCTATG 1624
Query 1853 CGGATTGA 1860
||||||||
Sbjct 1625 CGGATTGA 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5