BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63410.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939440 jgi|Araly1|939440|scaffold_503631.1 1712 0.0
> Ahg939440 jgi|Araly1|939440|scaffold_503631.1
Length=1055
Score = 1712 bits (927), Expect = 0.0
Identities = 1011/1051 (96%), Gaps = 7/1051 (1%)
Strand=Plus/Plus
Query 106 GATCTGTCATCGATGGCCTCTTTGATGCTCAACGGGGCCATTACCTTCCCCAAAGGTTTA 165
|||||| |||||||||| |||| | |||||||||||||||||||||||||||| ||||||
Sbjct 10 GATCTGACATCGATGGCTTCTTCGTTGCTCAACGGGGCCATTACCTTCCCCAAGGGTTTA 69
Query 166 GG-TTCCCCTGGTTCCAATTTGCATGCCAGATCGATTCCTCGGCCGACCTTACTCTCAGT 224
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 70 GGTTTCCCC-GGTTCCAATTTGCATGCCAGATCGATTCCTCGGCCGACTTTACTCTCAGT 128
Query 225 TACCCGAACCTCCACACCTAGACTCTCGGTGGCTACTAGATGCAGCAGCAGCAGCGT-GT 283
||||||||| |||||||||||||||||||||| ||||||| |||||||| | || ||
Sbjct 129 CACCCGAACCACCACACCTAGACTCTCGGTGGCAACTAGAT---GCAGCAGC-GTGTCGT 184
Query 284 CGTCTTCCCGGCCATCGGCGCAACCTAGGTTCATTCAGCACAAGAAGGAGGCTTACTGGT 343
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 185 CGTCTTCCCGGCCATCGGCGCAACCTAGGTTCATTCAGCACAAAAAGGAGGCTTACTGGT 244
Query 344 TCTACAGGTTCTTATCCATCGTATACGACCATGTCATCAATCCTGGGCATTGGACCGAGG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TCTACAGGTTCTTATCCATCGTATACGACCATGTCATCAATCCTGGGCATTGGACCGAGG 304
Query 404 ATATGAGAGACGACGCTCTTGAGCCAGCGGATCTCAGCCATCCGGACATGCGAGTGGTCG 463
||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct 305 ATATGAGGGACGACGCTCTGGAGCCGGCGGATCTCAGCCATCCCGACATGCGCGTGGTCG 364
Query 464 ATGTCGGCGGCGGAACTGGTTTCACTACTCTGGGCATAGTCAAGACAGTGAAGGCCAAGA 523
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 365 ATGTCGGCGGCGGCACTGGTTTCACTACTCTGGGCATAGTCAAGACTGTGAAGGCTAAGA 424
Query 524 ATGTGACCATTCTGGACCAGTCGCCACATCAGCTGGCCAAAGCAAAGCAAAAGGAGCCGT 583
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 425 ATGTCACCATTCTGGACCAGTCGCCACATCAGCTGGCCAAAGCGAAGCAAAAGGAGCCGT 484
Query 584 TGAAAGAATGCAAGATCGTCGAGGGAGATGCTGAGGATCTTCCTTTTCCAACCGATTATG 643
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 485 TGAAAGAATGCAAGATCGTCGAGGGAGATGCTGAGGATCTTCCTTTCCCCACCGATTATG 544
Query 644 CTGACAGATACGTTTCTGCTGGAAGCATTGAGTACTGGCCGGACCCGCAGAGGGGAATAA 703
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 545 CAGACAGATACGTTTCTGCTGGAAGCATTGAGTACTGGCCCGACCCGCAGAGGGGAATAA 604
Query 704 GGGAAGCGTACAGGGTTCTCAAGATCGGTGGCAAAGCGTGTCTCATCGGCCCTGTCTACC 763
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GGGAAGCCTACAGGGTTCTCAAGATCGGTGGCAAAGCGTGTCTCATCGGCCCTGTCTACC 664
Query 764 CAACCTTCTGGCTCTCTCGCTTCTTTTCTGATGTCTGGATGCTCTTCCCCAAGGAGGAAG 823
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 665 CAACCTTCTGGCTCTCTCGCTTCTTTGCTGATGTATGGATGCTCTTCCCCAAGGAGGAAG 724
Query 824 AGTACATTGAGTGGTTCAAGAATGCCGGTTTCAAGGACGTTCAGCTCAAGAGGATTGGCC 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AGTACATTGAGTGGTTCAAGAATGCCGGTTTCAAGGACGTTCAGCTCAAGAGGATTGGCC 784
Query 884 CCAAGTGGTACCGTGGTGTTCGCAGGCACGGCCTTATCATGGGATGTTCTGTCACTGGTG 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CCAAGTGGTACCGTGGTGTTCGCAGGCACGGCCTTATCATGGGATGTTCTGTCACTGGTG 844
Query 944 TTAAACCTGCCTCCGGTGACTCTCCTCTCCAGCTTGGTCCAAAGGAAGAGGACGTAGAGA 1003
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 845 TTAAACCTGCCTCCGGTGACTCTCCTCTCCAGCTTGGTCCAAAGGAAGAGGACGTAGAAA 904
Query 1004 AGCCTGTCAACAACCCCTTCTCCTTCTTGGGACGCTTCCTCCTGGGAACTCTAGCAGCTG 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGCCTGTCAACAACCCCTTCTCCTTCTTGGGACGCTTCCTCCTGGGAACTCTAGCAGCTG 964
Query 1064 CCTGGTTTGTGTTAATCCCTATCTACATGTGGATCAAGGATCAGATCGTTCCCAAAGACC 1123
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 965 CCTGGTTTGTGCTAGTCCCGATCTACATGTGGATCAAGGATCAGATCGTTCCCAAAGACC 1024
Query 1124 AACCCATCTGATCCTTCTCTTCTAGGACATG 1154
|||||||||||||| ||||||||||||||||
Sbjct 1025 AACCCATCTGATCCGTCTCTTCTAGGACATG 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5