BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G63420.1

Length=643
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939441 jgi|Araly1|939441|scaffold_503632.1                        451    2e-126


> Ahg939441 jgi|Araly1|939441|scaffold_503632.1
Length=331

 Score =  451 bits (244),  Expect = 2e-126
 Identities = 275/290 (95%), Gaps = 2/290 (1%)
 Strand=Plus/Plus

Query  140  AGGAGGAGTCTGTTTCTCACGGCGGGGGCAAGCACAGGATCCTTGCAGAGCTTGCCCGCG  199
            |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct  43   AGGAGGAGCCTGTTTCTCTCGGCGGCGGCAAGCACAGGATCCTTGCAGAGCTTGCCCGCG  102

Query  200  TTGAACAGGAAGTCGCTTTCTTGGAGAAAGAGTT-GAAGGAGGTCGAGAACACAGATATT  258
            ||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct  103  TTGAACAGGAAGTCGTTTTCTTGGAGAAAGAGTTGGAA-GAGGTTGAGAACACAGATATT  161

Query  259  GTATCAACCGTGTGTGAGGAGCTGCTATCTGTCATCGAGAAAGGACCCGATCCTCTGTTG  318
            |||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct  162  GTATCATCCGTGTGTGAGGAGCTGCTCTGTGTCATTGAGAAAGGACCCGATCCTCTGTTG  221

Query  319  CCACTAACCAATGGACCTTTGAACTTAGGATGGGACCGGTGGTTTGAAGGACCAAATGGA  378
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  222  CCACTAACCAATGGACCTTTTAACTTAGGATGGGACCGGTGGTTTGAAGGACCAAATGGA  281

Query  379  GGAGAAGGCTGCAGATGCTTAATACTTTGATTCGCTAGACAGAGTAATGT  428
            ||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct  282  GGAGAAGGCTGCAGATGCTTAATACTTTGATTCACGAGAGAGAGTAATGT  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559962706


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5