BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63430.1
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486851 jgi|Araly1|486851|fgenesh2_kg.5__2843__AT3G63430.1 1195 0.0
> Ahg486851 jgi|Araly1|486851|fgenesh2_kg.5__2843__AT3G63430.1
Length=1893
Score = 1195 bits (647), Expect = 0.0
Identities = 844/933 (90%), Gaps = 38/933 (4%)
Strand=Plus/Plus
Query 797 GGGATCGCATTTCCCCGAGCGTCAATAGGAGGAGACCAAGACCAACGCTCAAGGAACAGA 856
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 898 GGGA-CGGATTTCCCCGAGCGTCAAT---AGGAGACCAAGACCAACGCTCAAGGAACAGA 953
Query 857 GGAGAGTCTCTTCACTCCCTTGGCGGAGACCAGAACCTCTCCAGACGAGGATTGAAGACC 916
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 954 GGAGAGTCGCTCCACTCCCTTGGCGGAGACCAGAACCTCTCCAGTGGAGGATTGAAGACC 1013
Query 917 AGAGT---AGCACTCTAGCCGA-G-----------GA-A-G-AGATGTGGAAAGTGGATG 958
||||| |||||||||||||| | || | | ||||||||||||||||||
Sbjct 1014 AGAGTAGCAGCACTCTAGCCGAGGAAACAAATTCTGATATGCAGATGTGGAAAGTGGATG 1073
Query 959 TGTATAACAGACAAGGCAAAACCTTATTGGAGAGATGCGACAAGCTGCTCCACAGCATTG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TGTATAACAGACAAGGCAAAACCTTATTGGAGAGATGCGACAAGCTGCTCCACAGCATTG 1133
Query 1019 CTGAAATGGC--CG-CTGCTGAGGCCGGAGACTCACAACCGAGCCCCGTCTCTGTTCTTG 1075
| |||||||| || | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1134 CGGAAATGGCGGCGGCGGCTGAGGCCGGAGAGTCACAACCGAGCCCCGTCTCTGTTCTTG 1193
Query 1076 ACGCCTCAATTTACCACGAGGACTCTTCTCCGTCCCCCGTCCTGAAACGCACCCTTGACT 1135
|||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||
Sbjct 1194 ACGCCTCAATTTACCACGAGGACTCTTCCCCGTCTCCTGTCATGAAACGCACCCTTGACT 1253
Query 1136 TTGCTGATGC-TGAAGAAGACGAATCCTGGGGTGGCTCAATATTATCATCGTCCGACTCT 1194
|| ||| || | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1254 TTTCTGCTGAATCC-GAAGACGAATCCTGGGGTGGCTCAGTATTATCATCGTCCGACTCT 1312
Query 1195 GAATATGTATACATCTCGGACATCCTCCGAGCCTCAGATTGCCTTCCACAAGAGTCCGAC 1254
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1313 GAATATGTTTACATCTCGGACATCCTCCGAGCCTCAGATTGCCTTTCACAAGAGTCCGAC 1372
Query 1255 AGCTTCTCCTTTCTGGAAAAGCAGCAATACCTCAAAGGAAAATGCGCCTCCAGAGCCGCA 1314
| |||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1373 ATCTTCTCGTTCCTGGAAAAGCAGCAATACCTCAAAGGTAAATGCGCCTCCATAGCCGCA 1432
Query 1315 GCTCAGGAAAGACGCCTCATCTTCGACGCAGTGCAAGAGATTGTGGCGCGGAGAAGGAGC 1374
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GCTCAGGAAAGACGGCTCATTTTCGACGCAGTGCAAGAGATTGTGGCGCGGAGAAGGAGC 1492
Query 1375 TTGCCCCCGTGGATGATGGTAGG-AGAGGCTGATAATAAGATGCAAGTGATCTGGTCTGA 1433
||||||||||||| |||||| || |||||||||||| |||||||||||||||||||||
Sbjct 1493 TTGCCCCCGTGGAGGATGGT-GGCAGAGGCTGATAA---GATGCAAGTGATCTGGTCTGA 1548
Query 1434 ATTTCAGAAGATAAGAGACAAAAAGTCGTCCACGGAGGAAGATGA---CCTTGTGGGATA 1490
|||||| ||||||||||| |||||||||||||| || ||||| || ||||||||||||
Sbjct 1549 ATTTCAAAAGATAAGAGAGAAAAAGTCGTCCACAGATGAAGAGGAGGACCTTGTGGGATA 1608
Query 1491 CGTGTGCGGGGTCCTCGGAAGAGATTTGTCGGAGGACCGATGGCGAGATTTTCAGGTGGA 1550
||||||||||||||||||||| ||| | || ||||||||||||||||||| |||||||||
Sbjct 1609 CGTGTGCGGGGTCCTCGGAAGGGATCTATCAGAGGACCGATGGCGAGATTGTCAGGTGGA 1668
Query 1551 GATGTCAGAAGCAGTTCTTGACGTCGAACGCCTCATATTCAAAGATCTCATCGGCGAGAC 1610
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||| || ||
Sbjct 1669 GATGTCAGAAGCGGTTCTTGACATCGAACGCCTTGTATTCAAAGATCTCATCGGTGAAAC 1728
Query 1611 CATACGCCAGTTGGCTTTTCTTAACAGGTCCGACTCGCTGCGTAGGAGGCTGCTCTTTTG 1670
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 CATACGCCATTTAGCTGCTCTTAACAGGTCCGACTCGCTGCGTAGGAGGCTGCTCTTTTG 1788
Query 1671 ATATAAA-A--CTAGACTAAATTCTCTGACCCA 1700
||| ||| | |||||||||| | |||||||||
Sbjct 1789 ATACAAACAAACTAGACTAAAATATCTGACCCA 1821
Score = 531 bits (287), Expect = 9e-150
Identities = 484/569 (85%), Gaps = 54/569 (9%)
Strand=Plus/Plus
Query 247 CAACAAAGAtcttcttcttcttcttcttcttcCTCTAGGCCTTGGAGGTTCTCTAAAGAA 306
|||||| |||||||||||||| ||||| || || | |||||||||||||||||||||
Sbjct 311 CAACAACGATCTTCTTCTTCTAGGTCTTCGTCGTC-A--CCTTGGAGGTTCTCTAAAGAA 367
Query 307 GCTCCGAGGCTCTCCCTCGATAGCAGAGCCGTCGTGGATGCCAAGGGCTGCCTCAAACAC 366
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 368 GCTCCTCGGCTCTCCCTCGATAGCAGAGCCGTCGTGGATGCCAAGGGGTGCCTCAAACCC 427
Query 367 AGACAGATCCGAGCCGATGCGGTTGAGGCTGAGAACCAGCGCGGCTCACCCAGTGTGATC 426
|||||||||||| ||||||| | || |||||||| ||| ||||||||||| ||||||
Sbjct 428 AGACAGATCCGACCCGATGC-G--GA---TGAGAACCTGCGAGGCTCACCCAGCGTGATC 481
Query 427 GCACGGCTCATGGGATTGGAGCCATTTCCCCAACAGCCTCTCCAGAGATCTGCATCCGAG 486
|||||||||||||||||||||||||| |||| || | |||||||||||||||||
Sbjct 482 GCACGGCTCATGGGATTGGAGCCATTGCCCC-------TC-C-AGAGATCTGCATCCGAG 532
Query 487 TCCAGGGTCACCAGAGACTACATATTTGACTTTCACGATGACAAGGGAGCAGCTCAAGAT 546
||||||||||||||||||||| ||||||||||||| |||||||||||||| | |||||
Sbjct 533 TCCAGGGTCACCAGAGACTACTTATTTGACTTTCAAGATGACAAGGGAGCTG---AAGAT 589
Query 547 CCGGCTCCAATTAGGAACGCCCGAGCCC-A-C-CCAACCTCAGTAGTACGCCGAAAGAGT 603
||||| || ||| ||| ||| ||||| | | ||| ||| |||||||||||||||||||
Sbjct 590 CCGGCGGCATTTATGAA-GCC--AGCCCGAGCTCCACCCTTAGTAGTACGCCGAAAGAGT 646
Query 604 TTCTTTGATTCC--GGTG--ATTTC--T-T--CC-CGA---G-AG----TTTCCAAAATG 645
|||||||||||| || | | | | | || ||| | || |||||||||||
Sbjct 647 TTCTTTGATTCCCCGGAGCCAAGGCAGTGTGGCCGCGATTTGGAGAGAGTTTCCAAAATG 706
Query 646 AGTGGATTTGACG-C--TCCCCCGACCGATCTGGAAACCCTCAAGCAGCTTCTCGAAGCT 702
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AGTGGATTTGACGACGCTCCCCCGACCGATCTGGAAACCCTCAAGCAGCTTCTCGAAGCT 766
Query 703 CTTAGGCTCAAAGGACTCTTGCACTCGTCTTCACTCAAACATCAGAGCAGGAATCTCGTC 762
|| ||||||||||||||||||||||| | | ||| ||||||| |||||||||||||||||
Sbjct 767 CTCAGGCTCAAAGGACTCTTGCACTC-T-T-CACACAAACATGAGAGCAGGAATCTCGTC 823
Query 763 TTCGACCATCAT---TCTCCGATCAAACC 788
|||||||||||| ||||||||||||||
Sbjct 824 TTCGACCATCATCAATCTCCGATCAAACC 852
Score = 244 bits (132), Expect = 1e-63
Identities = 176/196 (90%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 1 CAGAGAAGCGGGAGAAGAGTG-TGCAGCAGCAACAGCCAACA-GAAGAAAATGGCAAAAG 58
||||||||||||||||||||| ||||||| || || || | | ||||| | | ||||
Sbjct 1 CAGAGAAGCGGGAGAAGAGTGCTGCAGCAACAGGAGGGAA-ATGGAGAAAGT-G--AAAG 56
Query 59 AGAAAGATCTGGAGAAGCAAATCGGCGGTTGCATGGCCGGCTTCTTCAACATCTTCGATC 118
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AGCAAGATCTCGAGAAGCAAATCGGCGGTTGCATGGCCGGCTTCTTCAACATCTTCGATC 116
Query 119 GCCCCAGTCTCCTCTCTCCTAATAAGCGTCTCTCTTCCTCTCCGAGCGCTGAATCTGAAT 178
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 117 GACCCAATCTCCTCTCTCCTAATAAGCGTCTCTCTTCCTCTCCCAGCGCTGAATCTGAAT 176
Query 179 CTGCCTC-GGGTAGGA 193
||||||| ||| ||||
Sbjct 177 CTGCCTCTGGG-AGGA 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70200321535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5