BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63440.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899338 jgi|Araly1|899338|Al_scaffold_0005_3304 2462 0.0
> Ahg899338 jgi|Araly1|899338|Al_scaffold_0005_3304
Length=1587
Score = 2462 bits (1333), Expect = 0.0
Identities = 1502/1584 (95%), Gaps = 9/1584 (1%)
Strand=Plus/Plus
Query 156 CTCCTCAGGAAAAGAACCATGCTTATAGTAAGAAGTTTCACCATCTTGCTTCTCAGCTGC 215
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 10 CTCCTCAGGAAAAGAACCATGCTTATAGTAAGAAGCTTCACCATCTTGCTTCTCAGCTGC 69
Query 216 ATAGCCTTTAAGTTGGCTTGCTGCTTCTCTAGCAGCATTTCTTCTTTGAAGGCGCTTCCC 275
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ATAGCCTTTAAGCTGGCTTGCTGCTTCTCTAGCAGCATTTCTTCTTTGAAGGCGCTTCCC 129
Query 276 CTAGTAGGCCATTTGGAGTTTGAACATGTCCATCACGCCTCCAAAGATTTTGGAAATCGA 335
||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 130 CTAGTTGGCCACTTGGAGTTTGAAGATGTCCATCACGCCTCCAAAGATTTTGGGAATCGA 189
Query 336 TACCAGTTGATCCCTTTGGCGGTCTTACATCCCAAATCGGTAAGCGACATCGCCTCAACG 395
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 190 TACCAGTTGATTCCTTTGGCGGTCTTACATCCCAAATCGGTAAGCGACATCGCCTCAGCG 249
Query 396 ATACGACACATCTGGATGATGGGCACTCATTCACAGCTTACAGTGGCAGCGAGAGGTCGT 455
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 250 ATACGACACATCTGGATGATGGGCCCTCATTCACAGCTTACGGTGGCAGCGAGAGGTCGT 309
Query 456 GGACATTCACTCCAAGGCCAAGCTCAAACAAGACATGGAATTGTTATACACATGGAATCA 515
||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 310 GGACATTCACTCCAAGGCCAAGCACAGACAAGACATGGAGTTGTTATACACATGGAATCA 369
Query 516 CTCCATCCCCAGAAGCTGCAGGTCTACAGTGTGGATTCCCCTGCTCCATATGTTGATGTG 575
|||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||
Sbjct 370 CTCCATCCCCAGAAGCTGCAAGTCTACAGTGTGGATGCTCCTGCTCCATACGTTGATGTG 429
Query 576 TCTGGTGGTGAGCTGTGGATAAACATTTTGCATGAGACCCTCAAGTACGGGCTTGCACCA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCTGGTGGTGAGCTGTGGATAAACATTTTGCATGAGACCCTCAAGTACGGGCTTGCACCA 489
Query 636 AAATCATGGACGGATTACCTGCATTTAACTGTAGGTGGTACTCTGTCCAATGCTGGAATA 695
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 490 AAATCATGGACGGATTACCTACATTTAACTGTAGGTGGTACTCTGTCCAATGCTGGAATC 549
Query 696 AGCGGCCAGGCATTCCGACATGGACCACAGATCAGCAATGTTCATCAACTGGAGATTGTC 755
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 550 AGCGGCCAGGCATTCCGACATGGACCACAAATCAGCAATGTTCATCAACTGGAGATTGTC 609
Query 756 ACAGGAAAAGGCGAGATCCTAAACTGTACAAAGAGGCAGAACAGCGACTTATTTAATGGT 815
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 610 ACAGGAAAAGGCGAGATCCTAAACTGTTCAAAGAGGCAGAACAGCGACTTGTTTGATGGT 669
Query 816 GTTCTTGGTGGTTTAGGTCAGTTTGGCATCATAACGCGGGCAAGAATAGCATTGGAACCA 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GTTCTTGGTGGTTTAGGTCAGTTTGGCATCATAACGCGGGCAAGAATAGCATTGGAACCA 729
Query 876 GCACCAACCATGGTAAAATGGATAAGAGTGTTATACCTGGATTTTGCAGCTTTTGCCAAG 935
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 730 GCACCAACCATGGTAAAATGGATAAGAGTGTTGTACCTGGATTTTTCAGCTTTTGCCAAG 789
Query 936 GACCAAGAGCAACTAATATCTGCCCAGGGCCACAAATTCGATTACATAGAAGGGTTTGTG 995
||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 790 GACCAAGAGCAACTAATATCTGC--AGATA-ACAAATTCGATTACATAGAAGGGTTTGTG 846
Query 996 ATAATAAACAGGACAGGCCTCCTGAACAGCTGGAGGTTGTCTTTCACCGCAGAAGAGCCT 1055
|||||||||||||||||||||||||||| ||||||||| || |||||| | |||||||||
Sbjct 847 ATAATAAACAGGACAGGCCTCCTGAACAACTGGAGGTTATCCTTCACCCCGGAAGAGCCT 906
Query 1056 TTAGAAGCAAGCCAATTCAAGTTTGATGGAAGGACTCTGTATTGTCTGGAGCTAGCCAAG 1115
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 907 TTAGAAGCAAGCCAATTCAAATCTGATGGAAGGACCCTGTATTGTCTGGAGCTAGCCAAG 966
Query 1116 TATTTGAAGCAAGATAACAAAGACGTAATCAACCAGGAAGTGAAAGAAACATTATCAGAG 1175
|| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 967 TACTTGAAGCAAGATAACAAAGATGTAATCAACCAGGAAGTGAAAGAAACGTTATCAGAA 1026
Query 1176 CTAAGCTACGTGACGTCGACACTGTTTACAACGGAGGTAGCATATGAAGCATTCTTGGAC 1235
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1027 CTAAGCTACGTGTCGTCGACACTGTTTTCAACGGAGGTAACATATGAAGCATTCTTGGAC 1086
Query 1236 AGGGTACATGTGTCTGAGGTAAAACTCCGATCGAAAGGGCAGTGGGAGGTGCCACATCCA 1295
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1087 AGGGTACATGTGTCTGAGGTAAAACTTCGATCGAAAGGGCAATGGGAGGTGCCACATCCA 1146
Query 1296 TGGCTGAACCTCCTGGTACCAAGAAGCAAAATCAATGAATTTGCAAGAGGTGTATTTGGA 1355
||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||| |||
Sbjct 1147 TGGCTGAACCTGCTGGTACCAAGAAGCACAATCAAAGAATTTGCAAAAGGTGTATTCGGA 1206
Query 1356 AACATACTAACGGATACAAGCAACGGCCCAGTCATCGTCTACCCAGTGAACAAATCAAAG 1415
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1207 AACATACTAACGGATACAAGCAACGGCCCAGTCATCGTATACCCAGTGAACAAATCAAAG 1266
Query 1416 TGGGACAATCAAACATCAGCAGTAACACCGGAGGAAGAGGTATTCTACCTGGTGGCGATC 1475
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1267 TGGGACAACCAAACATCAGCAGTAACACCGGAGGAAGAGGTATTCTATTTGGTGGCCATC 1326
Query 1476 CTAACATCGGCA-TCTCCAGGGTCGGCAGGAA--AGGATGGAGTAGAAGAGATCTTGAGG 1532
|| || |||||| || |||||| || |||| |||| ||||||||| |||| |||| |
Sbjct 1327 CTGACGTCGGCAGTC-CCAGGGAAGG-AGGATGGAGGA-GGAGTAGAACAGATATTGAAG 1383
Query 1533 CGGAACAGAAGAATACTGGAATTCAGTGAAGAAGCAGGGATAGGGTTGAAGCAGTATCTG 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 CGGAACAGAAGAATACTGGAATTCAGTGAAGAAGCAGGGATAGGGTTGAAGCAGTATCTG 1443
Query 1593 CCACATTACACGACAAGAGAAGAGTGGAGATCCCATTTCGGGGACAAGTGGGGAGAATTT 1652
||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1444 CCACATTACACAACCAGAGAAGAGTGGAGATCCCATTTCGGGGCCAAGTGGGGAGAATTC 1503
Query 1653 GTGAGGAGGAAATCCAGATATGATCCATTGGCAATTCTTGCGCCTGGCCACCGAATTTTT 1712
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1504 GTGAGGAGGAAATCGAGATATGATCCATTGGCAATACTTGCGCCTGGCCAGAGAATTTTT 1563
Query 1713 CAAAAGGCAGTCTCATACTCATGA 1736
||||||| |||||||||||||||
Sbjct 1564 GAAAAGGCTGTCTCATACTCATGA 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5