BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63450.3
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486853 jgi|Araly1|486853|fgenesh2_kg.5__2845__AT3G63450.1 1467 0.0
Ahg485553 jgi|Araly1|485553|fgenesh2_kg.5__1545__AT3G51950.1 363 3e-99
> Ahg486853 jgi|Araly1|486853|fgenesh2_kg.5__2845__AT3G63450.1
Length=1350
Score = 1467 bits (794), Expect = 0.0
Identities = 1161/1325 (88%), Gaps = 78/1325 (6%)
Strand=Plus/Plus
Query 291 ATGGATGTGTACGAAGCAACTAGGATCGTGCTCTCTAGAATCCAGAACTTAGACCCAGCT 350
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGATGTGTACGAAGCAACTAGGGTCGTGCTCTCTAGAATCCAGAGCTTAGACCCAGCT 60
Query 351 AATGCTTCCAAGATCATAGGTCTTCTCCTCCTTCAGGATCACGGTGAGAAGGAGATGATA 410
||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct 61 AATGCTTCCAAGATCATGGGCCTCCTCCTCCTTCAGGATCACGGAGAGAAGGAGATGATA 120
Query 411 AGGTTAGCTTTCGGGCCTCAGAATCTCCTTCATTCTGTCATAGCCAAGGCCAA-AAAGGA 469
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 121 AGGTTAGCTTTCGGGCCTCAGAATCTACTTCATTCTGTCATAGCCAAGGCCAAGAAA-GA 179
Query 470 CCTCGAAGAGCGGCTTTCTTTCTTGACTCCGAGAACCGCC-GAAGATTTTGAGTCCGATT 528
|||||| |||||||||||||||||| |||||||||||||| | | ||| | |||||
Sbjct 180 CCTCGACGAGCGGCTTTCTTTCTTGGCTCCGAGAACCGCCGGTTGCGTTTCCG-ACGATT 238
Query 529 TAGGGTTCGGATGGGGTCA---C-CGCAAAG-AG-GTGC---TT----A--GGTC--C-A 570
|||||||||||||||| || | | | | | | ||| || | || | |
Sbjct 239 TAGGGTTCGGATGGGGACAGTGCTC-CTACGCTGACTGCAAATTCCACATCCATCATCAA 297
Query 571 A-CTCTGTTCCGCCGAGACTTGCCAATCAGTTCACCGGTTATCCATTCTCCCCCAAAGGT 629
| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 298 AGCTCTGTTCCTCCGAGACTTGCCCATCAGTTCACCGGTTATCCATTCTCCCCCAAAGGT 357
Query 630 GTCAACTTGCAACAGAGTGAAGCC-CAA--AGAGCTGCTGCTTTGATGATGGGCGATGAC 686
|| |||||||| |||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 358 GTTAACTTGCAGCAGAGTGAAGCCAAAAGCAGAGCTGCTGCTCTGATGATGGGCGATGAC 417
Query 687 TTGCACAAATTGGGAATATGGAGGCCAGAGAGGATCGACCTCTCGGCCACGGCCTGCCCG 746
|||||||| ||||||| |||||||||||||||||||||||| || |||| ||||||||||
Sbjct 418 TTGCACAAGTTGGGAAGATGGAGGCCAGAGAGGATCGACCTTTCCGCCATGGCCTGCCCG 477
Query 747 GCGTCTAGACAGATCTATCTGACTTTCCCGGCTGACAGTATCTTCAGGGAAGAAGATGTT 806
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCTTCCAGACAGATCTATCTGACTTTCCCGGCTGACAGTATCTTCAGGGAAGAAGATGTT 537
Query 807 TCCGACTACTT---CA-----GTAC-G---TTTGGGCCAGTTCAGGACGTGAGGATACCT 854
||||||||||| || || | | |||||||||||||||||||||||||||||
Sbjct 538 TCCGACTACTTCAGCATGGTGGTGCAGTACTTTGGGCCAGTTCAGGACGTGAGGATACCG 597
Query 855 TACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGAGACTGTGAAGAGC 914
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 598 TACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGATACGGTGAAGAGC 657
Query 915 ATTCTGGCCAAAGGGAACCCTCACTTTGTGTGTCATTCCAGGGTTCTTGTTAAGCCTTAC 974
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 ATTCTGGCCAAAGGGAACCCTCACTTTGTGTGTGATTCCAGGGTTCTTGTTAAGCCTTAC 717
Query 975 AAGGAGAAAGGCAAAGTCCCAGACAAGTACAGGACTAAGCCATCCAGGGACATTATGGAT 1034
|||||||||||||||||||||||| | | | | | ||||||||||||||||
Sbjct 718 AAGGAGAAAGGCAAAGTCCCAGAC----A-A-G--T-----A--CAGGGACATTATGGAT 762
Query 1035 TTCCAGCTTGGGGGGAGGGCTTTTCATG---------AAGATCTGCTGTGGAAAAGGAGG 1085
||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 763 TTCCAGCTTGGAGGGAGGGCTTTTCATGACAACACCCAAGATCTGTTGTGGAAAAGGAGG 822
Query 1086 TTTGAAGAACGAGCTCTTGAGCTGCAGAGCACAAGGCTGATGAATCTGCAGCTTCTCGAC 1145
|||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 823 TTTGGAGAGCGAGCTCTTGAGCTTCAGAGCACAAGGCTGATGAATCTGAAGCTTCTAGAC 882
Query 1146 GTCGAGAAACAGTTTCAACTCAATTTCGACCAAACACTACTTGTTTCTCCACGACTAGTT 1205
||| ||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 883 GTCAAGAAACAATTTCAACTCAGTTTCGACCAAACA-T--TTGTTTCTCCACGACTAGTT 939
Query 1206 TCAA-ACAATCAGAGAGTGTGCACAAAAGAGAATGATGAGGATACAATCAAACTTCCAGA 1264
|||| | || ||||||||||| || |||||||| ||||||||| ||||||||||||||||
Sbjct 940 TCAAGA-AACCAGAGAGTGTGTACCAAAGAGAACGATGAGGATGCAATCAAACTTCCAGA 998
Query 1265 GAGCTTGGAGGATGATAGGCTGGTGGATAGCCCAATTGTATCACCGAAACACCATTTTCT 1324
|||||||||||||||||||||||| |||| |||| ||| |||||| | ||| |||| |||
Sbjct 999 GAGCTTGGAGGATGATAGGCTGGTAGATATCCCATTTGCATCACCCACACAGCATTGTCT 1058
Query 1325 CGAGTGTGG-G-GTAGCTGCAGAAACAAAGGGTTCAGGCTTGTCGTCGCCATCTTTTGAT 1382
||||| || | || | |||||| ||||| ||||| ||||||||||||| | |||||||
Sbjct 1059 CGAGTTTGAAGAGT-G-TGCAGACACAAACGGTTCTCGCTTGTCGTCGCCGTATTTTGAT 1116
Query 1383 CAGGATGAGTCTAGTACAGGTACATTGAAAGAGC-CTCTCAAGTCCTTGAAGTGCCAAAT 1441
| ||||||||||||||| ||||||||||||| | |||||| |||| | || ||||||||
Sbjct 1117 GACGATGAGTCTAGTACAAGTACATTGAAAGA-CTCTCTCATGTCCCTCAACTGCCAAAT 1175
Query 1442 GCCGAGGTTATCAATGATGGGGATAACACAGGGCAGCAGCGGACCAACAACGTGTCGCGT 1501
|||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 1176 ACCGAGGTTATCAATGATGGGGATATCACAGGGCAGCAGCGGAGCAACAACATGTCGCGT 1235
Query 1502 TGGGATCTAAACCCATTCAAAACAGCTAACCAGTGGTAGGAAGAGAAGATTAACCaaaaa 1561
|||||||||| ||||||||||||| ||||||||| | | |||||||||||||||| |||
Sbjct 1236 TGGGATCTAACCCCATTCAAAACAACTAACCAGT--T-G-AAGAGAAGATTAACCACAAA 1291
Query 1562 aaagg 1566
|||||
Sbjct 1292 AAAGG 1296
Score = 87.9 bits (47), Expect = 2e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1625 GGGGGAAGGTTGGTTGTTGTACCATTCATTAAACAAGAGTGTTAGTAAATGAGTCC 1680
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1295 GGGGGAAGGTTGTTTCTTGTACCATTCATTAAACAAGAGTGTTAGGAAATGAGTCC 1350
> Ahg485553 jgi|Araly1|485553|fgenesh2_kg.5__1545__AT3G51950.1
Length=2518
Score = 363 bits (196), Expect = 3e-99
Identities = 332/398 (83%), Gaps = 8/398 (2%)
Strand=Plus/Plus
Query 624 AAAGGTGTCAACTTGCAACAGAGTGAAGCCCAAAGA---GCTGCTGCTTTGATGATGGGC 680
|||| ||| |||||||| || | || | |||||| ||||||||||||||||| ||
Sbjct 1162 AAAGCTGTTAACTTGCAGCAAAACGATGTTCAAAGAGCTGCTGCTGCTTTGATGATAGGA 1221
Query 681 GATGACTTGCACAA-ATTGGGAATATGGAGGCCAGAGAGGATCGACCTCTCGGCCACGGC 739
||||| ||||| || || |||| |||||| || || ||||| || || || || | |||
Sbjct 1222 GATGAATTGCAGAAGCTT-GGAAGATGGAGACCTGAAAGGATTGATCTTTCTGCTATGGC 1280
Query 740 CTGCCCGGCGTCTAGACAGATCTATCTGAC-TTTCCCGGCTGACAGTATCTTCAGGGAAG 798
|| || || || ||||||||||||||||| ||| || || ||||||| |||||||| |
Sbjct 1281 TTGTCCAGCTTCAAGACAGATCTATCTGACATTT-CCTGCCGACAGTAGGTTCAGGGAGG 1339
Query 799 AAGATGTTTCCGACTACTTCAGTACGTTTGGGCCAGTTCAGGACGTGAGGATACCTTACC 858
||||||| ||| | ||||||||||| ||||| |||||||| || ||||||||||| || |
Sbjct 1340 AAGATGTGTCCAATTACTTCAGTACTTTTGGACCAGTTCAAGATGTGAGGATACCATATC 1399
Query 859 AGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGAGACTGTGAAGAGCATTC 918
|||| |||||||||||||| || ||||| || ||||||| |||||||| ||||||||||
Sbjct 1400 AGCAAAAGAGGATGTTTGGTTTTGTGACATTTGTGTACCCTGAGACTGTTAAGAGCATTC 1459
Query 919 TGGCCAAAGGGAACCCTCACTTTGTGTGTCATTCCAGGGTTCTTGTTAAGCCTTACAAGG 978
| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1460 TTGCCAAAGGGAATCCTCACTTTGTGTGTGATTCCAGAGTTCTTGTTAAGCCTTACAAGG 1519
Query 979 AGAAAGGCAAAGTCCCAGACAAGTACAGGACTAAGCCA 1016
|||||||||||||||| ||||| ||||| ||||| |||
Sbjct 1520 AGAAAGGCAAAGTCCCTGACAAATACAGAACTAA-CCA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5