BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63470.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486857 jgi|Araly1|486857|fgenesh2_kg.5__2849__AT3G63470.1 2868 0.0
> Ahg486857 jgi|Araly1|486857|fgenesh2_kg.5__2849__AT3G63470.1
Length=1786
Score = 2868 bits (1553), Expect = 0.0
Identities = 1723/1802 (96%), Gaps = 24/1802 (1%)
Strand=Plus/Plus
Query 1 ATTTAACTGTCTCTTCTTcaaaaccaaaaccaaaaccaaaaccTTCTATTGTTTCCCTCC 60
||||||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 1 ATTTAACTGTCTCTTCTTCAAAACCAAAACCAAAA-CAAAA------A-----AACCTTC 48
Query 61 CACGCTATAATTCA-TAGACATAAGAGAATGAGGAAAGGACAGGGCTACTCCTACTCTGT 119
| |||||| ||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 49 TA--CTATAACTCAGT-GACATAAGAGAATGAGGAAAGGGCAGGGCTACTCCTACTCTGA 105
Query 120 AATCGCATCGGTGTTGGTGTTACTGTGTGTGGTGGTGTCTCGAATCGAATGCAGCAGCCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 AATCGCATCGGTGTTGGTGTTACTGTGTGTGGTGGTGTCTCGAATCGAATGCAGCAGCCA 165
Query 180 AGTGCACGCCCTGAGCCGTCTTTACCTGTCTAAGCGAGGGGTTGGTGGTTCGTCCACCAT 239
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 166 AGTGCACGCCCTGAGCCGTCTGTACCTGTCGAAGCGAGGGGTTGGTGGTTCGTCCACCAT 225
Query 240 GGACACAAGCCATTTCAAGGCGGTTAAGGATTTGAAACCGTCTTCGCTGCGGAGTGCTGC 299
||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 226 GGACACAAGCCATTTTAAGGCTGTCAAGGATTTGAAACCGTCTTCGCTGCGGAGTGTTGC 285
Query 300 TAATCAGGAGGGGCTAAGAAAGAGAGATCTGATACGGAGATTGCCCGGACAGCCTCCCGT 359
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TAATCAGGAGGAGTTAAGAGAGAGAGATCTGATACGGAGATTGCCCGGACAGCCTCCCGT 345
Query 360 TAGTTTCGATCAGTACGGCGGCTATGTTACCGTCAACGAATCCGCCGGG-CGTTCCTTTT 418
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |
Sbjct 346 GAGTTTCGATCAGTACGGCGGCTATGTCACCGTCAACGAATCCG-CGGGCCGTTCCTTCT 404
Query 419 TCTACTATTTCGTGGAAGCCT----CT--AAGTCTAAAGATTCTTCTCCTCTGCTTCTCT 472
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 405 TCTACTATTTCGTGGAAGCCTCCAACTCCAAGTCTAAAGATTCTTCTCCTCTACTTCTCT 464
Query 473 GGCTCAACGGCGGACCGGGATGCTCGTCACTGGCGTATGGAGCATTACAAGAGCTTGGGC 532
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 465 GGCTCAACGGCGGACCGGGATGCTCGTCACTGGCGTATGGAGCACTACAAGAGCTTGGGC 524
Query 533 CGTTCAGAGTACACAGCGACGGCAAAACGCTTTTTAGAAACCGATATGCATGGAACAATG 592
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CGTTCCGAGTGCACAGCGACGGCAAAACGCTTTTTAGAAACCGATATGCATGGAACAATG 584
Query 593 CTGCGAATGTCTTGTTCTTAGAATCGCCGGCGGGAGTGGGGTTCTCGTACACCAACACGA 652
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 585 CTGCGAACGTCTTGTTCTTAGAATCGCCGGCAGGAGTGGGGTTCTCGTACACCAACACAA 644
Query 653 CGTCGGACCTGGAGAAGCACGGGGACAGGAATACCGCAGCTGATAACTACATCTTCCTGG 712
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 645 CGTCGGACCTGGAGAAGCATGGTGACAGGAATACCGCGGCTGATAACTACATCTTCCTGG 704
Query 713 TTAACTGGCTGGAGAGGTTCCCGGAGTACAAAGGCAGGGACTTGTACATCGCCGGTGAGA 772
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 705 TTAAGTGGCTGGAGAGGTTCCCGGAGTACAAAGGCAGGGACTTGTACATAGCCGGTGAGA 764
Query 773 GCTATGCCGGCCACTATGTTCCGCAACTTGCCCATACTATCCTTCTCCATCACCGGAGCT 832
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 765 GCTATGCCGGCCACTATGTTCCACAACTTGCCCATACTATCCTTCTCCATCACCGGAGCT 824
Query 833 TCTTCAATCTCAAGGGCATTCTGATAGGAAATGCGGTGATCAACGACGAGACCGACTTGA 892
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CCCTCAATCTCAAGGGCATTCTGATAGGAAATGCGGTGATCAACGACGAGACCGACTTGA 884
Query 893 TGGGTATGTACGACTTTTTCGAGAGTCATGCTTTGATCTCCGAAGATTCTTTGGCTAGAC 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TGGGTATGTACGACTTTTTCGAGAGTCATGCTTTGATCTCCGAAGATTCTTTGGCTAGAC 944
Query 953 TCAAGAGCAACTGCGATCTCAAGACGGAGTCTGCGAGTGTAATGACTGAGGAGTGCGCGG 1012
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TAAAGAACAACTGCGATCTCAAGACGGAGTCTGCGAGTGTAATGACTGAGGAGTGCGCGG 1004
Query 1013 TGGTGTCCGACCAAATAGACATGGATACATATTACCTCGACATCTACAACATATACGCTC 1072
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1005 TGGTGTCCGACCAAATAGACATGGACACATATTACCTCGACATCTACAACATATACGCTC 1064
Query 1073 CCTTGTGCCTCAACTCCACGCTCACTCGCAGGCCCAAGCGAGGAACCACAATAAGGGAGT 1132
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1065 CCTTGTGCCTCAACTCCACGCTCACTCACAGGCCCAAGCGAGGAACCACAATAAGGGAGT 1124
Query 1133 TTGACCCCTGCAGTGACCATTACGTGCAGGCCTACCTGAACAGACCTGAAGTCCAAGCGG 1192
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TTGATCCCTGCAGTGACCATTACGTGCAGGCCTACCTGAACAGACCTGAAGTCCAAGCGG 1184
Query 1193 CCCTGCACGCAAACGCTACGAAGCTGCCTTACGAGTGGCAGCCGTGCAGCAGTGTGATAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCCTGCACGCAAACGCTACGAAGCTGCCTTACGAGTGGCAGCCGTGCAGCAGTGTGATAA 1244
Query 1253 AGAAGTGGAACGACAGTCCTACCACAGTGATTCCTCTCATCAAGGAGCTGATGGGTCAGG 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AGAAGTGGAACGACAGTCCTACCACAGTGATTCCTCTCATCAAGGAGCTGATGGGTCAGG 1304
Query 1313 GCGTCCGCGTCTGGGTGTTCAGCGGAGACACAGACGGGAGAATTCCAGTGACGTCCACCA 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GCGTCCGCGTCTGGGTGTTCAGCGGAGACACAGACGGGAGAATTCCAGTGACGTCCACCA 1364
Query 1373 AATACTCCCTCAAGAAGATGAATCTAACGGCCAAAACGGCCTGGCATCCATGGTACCTAG 1432
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 1365 AATACTCCCTCAAGAAGATGAATCTGACGGCCAAAACGGCTTGGCATCCATGGTACCTTG 1424
Query 1433 GGGGTGAGGTGGGTGGATACACAGAGGAGTACAAAGGGAAATTGACATTTGCCACAGTGA 1492
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1425 GGGGGGAGGTGGGTGGATACACAGAGGAGTACAAAGGGAAGTTGACATTTGCCACCGTGA 1484
Query 1493 GAGGGGCTGGTCATCAAGTTCCCAGCTTCCAGCCAAAGCGCTCTCTTTCACTCTTCATTC 1552
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1485 GAGGGGCAGGCCATCAAGTTCCCAGCTTCCAGCCAAAACGCTCTCTTTCACTCTTCATTC 1544
Query 1553 ACTTCCTCAATGACACTCCTCTCCCTGACACCTCTCGTTACTAAATATTCTATCTGAGAT 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 ACTTCCTCAATGACACTCCTCTCCCTGACACCTCTCGTTACTAAATATTCTATCTGAGAT 1604
Query 1613 TGTAATTTCTCTCTTAATTAGCTTTTATTCATCCTCCCATCCATTTTTTATCTACTATTT 1672
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1605 TGTAATTTCTCTCTTATTTAGCTTTTATTCCTCCTCCCATCCATTCTTTATCTACTATTT 1664
Query 1673 CATTACATACCTTTGAATGTTAATATCTGTTTTGCTCTCACGACCTAAAAAGAGAAACTT 1732
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1665 CATTACATAACTTTGAATGTTAATATCTGTTTTGCTCTCACGACCTAAAAAGAGCAACTT 1724
Query 1733 ATCTCTTTACCATCTACTTGTCCACATCTTCTACATTACCAAGATAGTATATTCATTTTA 1792
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1725 ATCTCTTTACCATCTACTTGTCCACATCTTCTACATTACCAAGACAGTATATTCATATTA 1784
Query 1793 TC 1794
||
Sbjct 1785 TC 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5