BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63480.1
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939448 jgi|Araly1|939448|scaffold_503639.1 2414 0.0
Ahg486857 jgi|Araly1|486857|fgenesh2_kg.5__2849__AT3G63470.1 283 3e-75
> Ahg939448 jgi|Araly1|939448|scaffold_503639.1
Length=1456
Score = 2414 bits (1307), Expect = 0.0
Identities = 1395/1439 (97%), Gaps = 0/1439 (0%)
Strand=Plus/Plus
Query 94 GAGATGTCTAACGTAACCGTCTGTGCGCGATTCAGGCCGCGAAGCTCTAAAGAGATGCGC 153
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 18 GAGATGTCTAACGTAACCGTCTGTGCGCGATTTAGGCCCCGAAGCTCTAAAGAGATGCGC 77
Query 154 GATCCCAGCAGAGATGGTGTCTGTGCTCGACCCATCGACGCTGAAACCTTCGTTTTCCAA 213
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 78 GATCCCAGCAGAGATGGTGTTTGTGCTCGACCCATCGACGCTGAAACCTTCGTTTTCCAA 137
Query 214 GATGACAAGGAAGATGAATTTACATTTAGCCTCGATAGAGTTTTTTATGAGGACTCTACC 273
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 138 GATGACAAGGAAGATGAATTTACATTTAGCCTTGATAGAGTTTTTTATGAGGACTCTACC 197
Query 274 CAAGCTGCGGTTTATGAGTTTCTGGCTCTCCCCATCATGAGAGACGCTGTAAATGGTATA 333
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CAAGCTGCGCTTTATGAGTTTCTGGCTCTCCCCATCATGAGAGACGCTGTAAATGGTATC 257
Query 334 AACGGAACAATCATCACTTATGGACAGACAGGGGCTGGGAAGACTTATTCCATGGAGGGA 393
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 258 AACGGAACAATCATCACTTATGGACAGACAGGGGCTGGGAAGACATATTCCATGGAGGGA 317
Query 394 CCAGGCATCCAGGACTGTGATGAGCACAATAAAGGACTTCTTCCAAGAGTGGTCCATGGG 453
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 318 CCAGGCATCCACGACTGTGATGACCACAATAAAGGACTACTTCCAAGAGTGGTCCATGGG 377
Query 454 ATGTTTGAGCAAATCAGCTCTTCCAATGATATTGCAAGATACACTGTTAAATTGTCTATG 513
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 378 ATGTTTGAGCAAATCAGCTCTTCCAATGATTTTGCAAGATACACTGTTAAATTGTCTATG 437
Query 514 GTTGAGATCTACATGGAGAAAGTCAGGGACCTGTTGGACTTATCAAAAGCAAACATACAG 573
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 438 GTTGAGATCTACATGGAGAAAGTCAGGGACCTGTTAGACTTATCAAAAGCAAACATACAG 497
Query 574 ATCAAGGAGAACAAAACACAAGGAATACTCTTGTCAGGCGTTACAGAGGCTAGCTTCATT 633
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 498 ATCAAGGAGAACAAAACACAAGGAATTCTCTTGTCAGGCGTTACAGAGGCTAGCTTCATT 557
Query 634 GTGCCTGTATCAGATTCGGTGGAGGCATTACAACATCTATGCACCGGTTTAGCTAACCGC 693
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 558 GTGCCTGTATCAGATTCGGCGGAGGCATTACAACATCTATGCACCGGTTTAGCAAACCGC 617
Query 694 GCAGTTGGGGAAACCCAAATGAATATGTCCAGCAGTAGAAGCCACTGCGCCTACTTGTTC 753
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GCAGTTGGAGAAACCCAAATGAATATGTCCAGCAGTAGAAGCCACTGCGCCTACTTGTTC 677
Query 754 ACAATCCAGCAGGATTCAGTTAAAGATAAAAGGGTAAAAACAGGAAAACTGATTCTTGTC 813
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 678 ACAATCCAGCAGGATTCAGTTAAAGATAAGAGGGTAAAAACAGGAAAACTGATTCTTGTC 737
Query 814 GACCTGGCTGGCTCAGAGAAAGCAGACAAAACTGGAGCAGAAGGTAGGGTTCTTGAAGAA 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GACCTGGCTGGCTCAGAGAAAGCAGACAAAACTGGAGCAGAAGGTAGGGTTCTTGAAGAA 797
Query 874 GCGAAGACGATCAATAAATCGCTCTCAGCCTTGGGGAACGTGATAAACGCTCTCACTAGT 933
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 798 GCGAAGACGATCAATAAATCGCTCTCAGCCTTGGGGAACGTGATAAACGCTCTCACAAGT 857
Query 934 GGGCCATCTAGCAAAGGGAATCACATACCATATCGTGACTCCAAGCTTACTCGCATCTTA 993
||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 858 GGGTCATCTAGCAAAGCGAATCACATACCATATCGTGACTCCAAACTTACTCGCATCTTA 917
Query 994 CAGGATGCCCTGGGTGGAAATTCTCGAATGGCGCTGCTTTGCTGTTGCTCACCAAGCACT 1053
||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 918 CAGGATGCCCTGGGTGGGAATTCTCGAATGGCACTGCTTTGCTGTTGCTCACTAAGCACT 977
Query 1054 TTAAATGCATCTGAGACGCTCTCAACTCTCAGGTTTGGCATGAGGGCAAAACACATAAAA 1113
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 978 TTAAATGCATCTGAGACGCTCTCAACCCTCAGGTTTGGCATGAGGGCAAAACACATCAAA 1037
Query 1114 GCATCACCACGTGCTAGTGAAGTGAAATCTGCGAAGGCACAGGAGGAACCCTCCTCGGTT 1173
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1038 GCATCACCACGTGCCAGTGAAGTGAAATCTGCGCAGGCACAGGAGGAACCCTCCTCGGTA 1097
Query 1174 ACCAAAGATGAAAAATGTGGGAGGATCCTAGAAAAGATGAAAGAGAGGATGAGCAACGAA 1233
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1098 ACCAAAGATGAAAAATGTGGGAGGATCCTAGAGAAGATGAAAGAGAGGATGAGCAACGAA 1157
Query 1234 GACATCAAAATGCTAGAAGATGTGTTTATACAGGAAGGGATCATTTTCAGCCTAGATTCG 1293
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GACATCAAGATGCTAGAAGAAGTGTTTATACAGGAAGGGATCATTTTCAGCCTAGATTCT 1217
Query 1294 ATGGCTGAAGTGGAAACCGTATACGAAGATATTGTATCAAAAACTATACAATCCTTACAG 1353
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 ATGGAAGAAGTGGAAACCGCATACGAAGATATTGTATCAAAAACTATACAATCCTTACAG 1277
Query 1354 CAGGCTGTTGATGAACTCCAACAGAAAGTCAAAAAGTTAGAAGCAGAAAACATAGGTATT 1413
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1278 CAGGCTGTTGATGAACTCCAACTGAAAGTCAAAAAGTTAGAAGCAGAAAACATGGGTATT 1337
Query 1414 CAGGAACAAGCATTGCGCAATCACGAACCTGGTTCGGTCGGAAAGATGTCAAGGTTCATC 1473
|||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1338 CAGGTACAAGCATTGTGCAATCACGAACCTGGTCCGGTTGGAAAGATGTCAAGGTTCATC 1397
Query 1474 AGTTCTTGGTATGCATCGTTCTTTACGTCCTAAAGATGATAAAATGAATATACTATCTT 1532
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1398 AGTTCTTGGTATGCATCGTTCTTTACGTCCTAAAGATGATAATATGAATATACTCTCTT 1456
> Ahg486857 jgi|Araly1|486857|fgenesh2_kg.5__2849__AT3G63470.1
Length=1786
Score = 283 bits (153), Expect = 3e-75
Identities = 167/174 (96%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 1511 GATAAAATGAATATACTATCTTGGTAATGTAGAAGATGTGGACAAGTAGATGGTAAAGAG 1570
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 GATAATATGAATATACTGTCTTGGTAATGTAGAAGATGTGGACAAGTAGATGGTAAAGAG 1727
Query 1571 ATAAGTTTCTCTTTTTAGGTCGTGAGAGCAAAACAGATATTAACATTCAAAGGTATGTAA 1630
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1726 ATAAGTTGCTCTTTTTAGGTCGTGAGAGCAAAACAGATATTAACATTCAAAGTTATGTAA 1667
Query 1631 TGAAATAGTAGATAAAAAATGGATGGGAGGATGAATAAAAGCTAATTAAGAGAG 1684
|||||||||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 1666 TGAAATAGTAGATAAAGAATGGATGGGAGGAGGAATAAAAGCTAAATAAGAGAG 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63153626210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5