BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63490.1
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939449 jgi|Araly1|939449|scaffold_503640.1 1618 0.0
> Ahg939449 jgi|Araly1|939449|scaffold_503640.1
Length=1077
Score = 1618 bits (876), Expect = 0.0
Identities = 1029/1097 (94%), Gaps = 34/1097 (3%)
Strand=Plus/Plus
Query 46 GAAAGAAAGAGAGCTCCAACAATGGCTGCTTGCGCTACTCACTCCTCTCTCATGCTAGCA 105
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 GAAAGAAAGAGAGCTCCAAGAATGGCTGCCTGCGCCACTCACTCCTCTCTCATGCTAGCA 60
Query 106 TACGCCGCCGCATCCACTCGTTCCCAGGACCTTA---CCCCTACTCCATCTCTTTTCTCT 162
|| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TA---CGCCG------CTCGTTCCCAGGACCTTACCCCCCCTACTCCATCTCTTTTCTCT 111
Query 163 TTTGCCAGCTCCAGACCCAACCACTTGAGCTTCCCGCTTCTTCTCCTTGGGGGTTCCAGG 222
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 112 TTTGCCAGCTCTAGACCCAACCACTTGAGCGTCCCGCTTCTTCTCCTTGGGGGTTCCAGG 171
Query 223 GACCGGAGATGTGCTGCTATTGACAGAGCTTCCAACC-A-----CAAGTTTATTGTCTCC 276
||||| ||| || ||||||||||||||||| | | || |||||||||||
Sbjct 172 GACCGCAGA-----TG----TGACAGAGCTTCCAACCGAGCTTTCCAGGTTATTGTCTCC 222
Query 277 GCCGTGGCCGCTGAGGCTGACCTCGACACGGAGG-AG--GACCTGGAGCAGACCGCCACC 333
||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 223 GCCGTGGCCGCTGAGGCTGACCTCGACACCGAGGAAGACGACCTGGAGCAGACCGCCACC 282
Query 334 GCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGAT 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGAC 342
Query 394 AGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTAT 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 AGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTAT 402
Query 454 GATGTCAACACTGCTATCTCTTTGCTTAAACAAACTGCCAACACAAGGTTTGTTGAGTCT 513
||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 403 GATGTCATCACTGCTATATCTTTGCTTAAACAAACTGCCAACACCAGGTTTGTTGAGTCT 462
Query 514 GTTGAAGCCCATTTCCGTCTCAACATCGATCCTAAGTACAATGACCAGCAGCTGCGTGCA 573
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 463 GTTGAAGCCCATTTCCGTCTCAACATCGATCCAAAGTACAATGACCAGCAGCTGCGTGCT 522
Query 574 ACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGT 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 ACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGT 582
Query 634 GAGAAGGTTGATGAAGCCAAAAGTGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATC 693
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 583 GAGAAGGTCGATGAAGCCAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATC 642
Query 694 GAACAGATTAAAGGAGGCTTCATGGAGTTTGACAAGCTGATTGCATCCCCGGATATGATG 753
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 643 GAACAGATTAAAGGAGGCTTCATGGAGTTTGATAAGTTGATTGCATCCCCGGATATGATG 702
Query 754 GTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGACCACGGGGGCTCATGCCAAATCCCAAG 813
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 703 GTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGCCCACGCGGACTCATGCCAAATCCCAAG 762
Query 814 GCTGGTACAGTCACAGCGAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTT 873
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GCTGGTACGGTCACAGCTAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTT 822
Query 874 GAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCATTTGGGAAAGTTAATTTTACA 933
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 823 GAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCCTTTGGGAAAGTTAATTTTACA 882
Query 934 GAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCA 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCA 942
Query 994 AAGGGAGCTAAAGGAGTGTACTGGAAAAGCGCTCACATATGCTCGTCAATGGGGCCTTCC 1053
|||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 943 AAGGGAGCAAAAGGAGTGTACTGGAAAAGTGCACACATATGCTCATCAATGGGGCCTTCC 1002
Query 1054 ATCAAGTTGAACATAAGAGAGATGATAGACTTCAAGCCTCCCACTGCGAACTAATC-GAC 1112
||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| | | |
Sbjct 1003 ATCAAGTTGAACATAAGGGAGATGATTGACTTCAAGCCTCCCGCTGCGAACTAACCAG-C 1061
Query 1113 AAC-GCCATTTGTAAAT 1128
||| || || |||||||
Sbjct 1062 AACCGC-ATCTGTAAAT 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53935786920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5