BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63530.1
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324777 jgi|Araly1|324777|fgenesh1_pm.C_scaffold_5002321 1199 0.0
> Ahg324777 jgi|Araly1|324777|fgenesh1_pm.C_scaffold_5002321
Length=744
Score = 1199 bits (649), Expect = 0.0
Identities = 716/748 (96%), Gaps = 5/748 (1%)
Strand=Plus/Plus
Query 254 ATGAATGGAGATAATAGACCAGTGGAAGATGCTCATTACACGGAGACAGGTTTCCCTTAT 313
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAATGGAG---ATAGACCAGTGGAAGATGCTCATTACACGGAGACGGGTTTCCCTTAT 57
Query 314 GCTGCTACTGGAAGTTACATGGACTTT-TATGGTGGTGCGGCTCAGGGGCCTCTTAACTA 372
||||| ||||| |||||||| || ||| ||||||||| |||||||||||||||| |||||
Sbjct 58 GCTGCAACTGGCAGTTACATCGA-TTTCTATGGTGGTCCGGCTCAGGGGCCTCTAAACTA 116
Query 373 CGATCATGCCGCAACTATGCATCCTCAGGACAATCTGTACTGGACCATGAATACCAATGC 432
| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 117 TGCTCATGCCGGAACTATGCATCCTCAGGACAATCTGTACTGGACCATGAATTCAAATGC 176
Query 433 ATACAAGTTTGGGTTTTCAGGATCAGATAATGCTTCTTTCTATGGTTCATATGACATGAA 492
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 177 ATACAAGTTTGGGTTTTCAGGATCAGATAATGCTTCTTTCTATGGTTCTTATGACATGAA 236
Query 493 CGATCATTTATCGAGGATGTCCATAGGGAGAACAAATTGGGACTATCATCCCATGGTGAA 552
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 237 CGATCATTTATCGAGGATGTCCATAGGGAGAACAAATTGGGACTACCATCCCATGGTGAA 296
Query 553 CGTTGCTGATGATCCTGAAAACACAGTTGCACGTTCCGTCCAAATCGGAGACACAGATGA 612
||||| |||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||
Sbjct 297 CGTTGTTGATGATCCTGAAATCACAGTTACACGTTCTGTCCAAATCGGGGACACAGATGA 356
Query 613 GCACTCTGAAGCTGAAGAATGCATTGCAAATGAGCATGATCCCGACAGTCCTCAGGTATC 672
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCACTCTGACGCTGAAGAATGCATTGCAAATGAGCATGATCCCGACAGTCCTCAGGTATC 416
Query 673 CTGGCAAGATGACATTGATCCTGATACAATGACCTATGAGGAATTAGTAGAGCTGGGGGA 732
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTGGCAAGATGATATTGATCCTGATACAATGACCTATGAGGAATTAGTAGAGCTGGGGGA 476
Query 733 AGCAGTAGGAACAGAAAGCAGGGGGTTGTCTCAGGAACTCATAGAAACGCTTCCCACTAA 792
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGCAGTAGGAACAGAAAGCCGGGGGTTGTCTCAGGAACTCATAGAAACGCTTCCCACTAG 536
Query 793 AAAGTATAAGTTTGGGAGCATCTTCTCCAGGAAAAGAGCTGGGGAGAGGTGTGTGATATG 852
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 AAAGTATAAGTTTGGGAGCATCTTCTCCAGGAAAAGAGCTGGGGAAAGGTGTGTGATATG 596
Query 853 CCAGCTCAAGTACAAGATAGGGGAGAGGCAAATGAATCTGCCGTGCAAGCATGTGTATCA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCAGCTCAAGTACAAGATAGGGGAGAGGCAAATGAATCTGCCGTGCAAGCATGTGTATCA 656
Query 913 TTCTGAATGCATTTCCAAATGGCTAAGCATCAACAAGGTTTGCCCGGTGTGTAACAGCGA 972
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 657 TTCTGAATGCATTTCCAAATGGCTAAGCATCAACAAGGTTTGCCCAGTGTGCAACAGCGA 716
Query 973 GGTCTTTGGGGAGCCCAGCATTCATTGA 1000
||||||||| ||||||||||| ||||||
Sbjct 717 GGTCTTTGGAGAGCCCAGCATCCATTGA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5