BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G63540.1

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939454 jgi|Araly1|939454|scaffold_503645.1                        750    0.0  


> Ahg939454 jgi|Araly1|939454|scaffold_503645.1
Length=730

 Score =  750 bits (406),  Expect = 0.0
 Identities = 416/421 (99%), Gaps = 0/421 (0%)
 Strand=Plus/Plus

Query  17   GAAGGGTGGAAGGAGAGGCTGGTGTCGAAGGTGGAGAAGGGGACAAACGGAACAGACAGC  76
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  GAAGGGTGGAAGGAGAGGCTGGTGTCGAAGGTGGAGAAGGGGACAAACGGAACAGACAGC  353

Query  77   GAATTCTATAACCCGAAGAAGAAGACGGAGAAGGAGTACCTGACATTCCTGGCGGGATTC  136
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  GAATTCTACAACCCGAAGAAGAAGACGGAGAAGGAGTACCTGACATTCCTGGCGGGATTC  413

Query  137  AGACAGCTGGCGCCGAGGGATGTGATTCTGAACAACCTTGCCTTGTCGGACGTGGAGCTG  196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  AGACAGCTGGCGCCGAGGGATGTGATTCTGAACAACCTTGCCTTGTCGGACGTGGAGCTG  473

Query  197  CAGGATTTGATAGCCGGCGCGGACAAAGTGGTGTCGGAGGAGAGGAAGGACGAGACAGGG  256
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  474  CAGGATTTGATAGCCGGCGCCGACAAAGTGGTGTCGGAGGAGAGGAAGGACGAGACAGGG  533

Query  257  CAGGTCTACTATCTGTACGAGATAGATGGGGTTGGAAAGCACAGCCTGATCACAGTCACT  316
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  534  CAGGTCTACTATCTGTACGAGATCGATGGGGTTGGAAAGCACAGCCTGATCACAGTCACT  593

Query  317  TGCTCCAAGAACAAGCTCTACGCCCATTTCGTAAACGCCCCTGCGCCCGAGTGGAACCGC  376
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  594  TGCGCCAAGAACAAGCTCTACGCCCATTTCGTAAACGCCCCTGCGCCCGAGTGGAACCGC  653

Query  377  GACCACGATACATTAACCCACCTTCGCGACTCCTTCAAGACTGTCTCTTCTTCTTGAAAT  436
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  654  GACCAGGATACATTAACCCACCTTCGCGACTCCTTCAAGACTGTCTCTTCTTCTTGAAAT  713

Query  437  T  437
            |
Sbjct  714  T  714



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22797504366


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5