BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G66652.1 Length=3070 Score E Sequences producing significant alignments: (Bits) Value Ahg477974 jgi|Araly1|477974|fgenesh2_kg.3__675__AT3G66652.1 3458 0.0 > Ahg477974 jgi|Araly1|477974|fgenesh2_kg.3__675__AT3G66652.1 Length=2952 Score = 3458 bits (1872), Expect = 0.0 Identities = 2302/2503 (92%), Gaps = 55/2503 (2%) Strand=Plus/Plus Query 77 ATGGATTCTACTGATGATGATTTCGGTGACTTGTACGTTGATGATGCCAAGTTTCAGGCG 136 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 ATGGATTCTACTGATGATGATTTCGGTGACTTGTACGTTGATGATGCCAAGGTTCAGGCC 60 Query 137 ACTGATGCTT---TCGA--A--TCGGA---G-----T-GTGCTACGAACTC----CG-GC 175 | |||||||| ||| | | ||| | | |||| | ||| || | || Sbjct 61 AGTGATGCTTCCGCCGACGATGTAGGATTCGTAAAATCGTGCAAAGAA-TCGGAATGTGC 119 Query 176 GA-GGA-T-AAG-GGTTTTGAAGAGACGGTAAAGTCTGATTCGGAAGGTGAAGTGAAGAA 231 | | | | || | |||||||| ||||||||| |||||| |||||||||| ||||||| Sbjct 120 TACGAATTCCAGCGATTTTGAAGGGACGGTAAAACCTGATTTGGAAGGTGAAATGAAGAA 179 Query 232 ATTTGATGTTGTTGCTAAGGATTCGAGTCCGTGTGACGACGACGATTGTGCTATGAATCT 291 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 180 ATTTGATGTTGTTGCTAAGGATTCGAGTCCGTGT---GACGACGATTGTGCTGTGAATCT 236 Query 292 GACTGAGGCCGATGAAGAATCGGAA-TT--T---AGTGATAGTGATGATGATTTGAATAT 345 ||||||||||||||||||||||||| || | |||||||||||||||||||||||||| Sbjct 237 GACTGAGGCCGATGAAGAATCGGAATTTAGTGACAGTGATAGTGATGATGATTTGAATAT 296 Query 346 AGTGCTCAAAGACGACGACTCTAAAGCCCTTCCTGCTTCTTGTGTGTTTAACACCAACTT 405 |||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||| Sbjct 297 AGTGCTCAAAGACGACGATTCTAAACCCCTTCCTGCTGCTTGTGTCTTTAACACCAACTA 356 Query 406 TGGCGGATACGAAGCATCCAAAGCTTCCTCGTTTCAGAGACGGTGGACTAGAAACGCTTC 465 | || || | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 357 T---GG---CG--G-ATCCAAAGCTTGCTCGTTTCAGAGACGGTGGACTAGAAACGCTTC 407 Query 466 AGCTAATAATGCTTGCATCGATCCTTCTTTAGGAATGTCTCAATACAGATATAGTTTCCC 525 ||||||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||| | Sbjct 408 AGCTAATAACGCTTGCATTGATCCGTCTTTAGGAATGCCTCAATATGGATATAGTTTCTC 467 Query 526 AAACCCTTGGTCCAGGACACCTTTTGATGTAAATCTCGATGTGTTAGAGAAGAAGCCATG 585 ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| Sbjct 468 AAACCCTTGGTCCAGGACACCTTTTGACGTAAATTTCGATGTGTTTGAGAAGAAGCCATG 527 Query 586 GAGGGATCCTGGTACGGATACCAGTGACTTTTTTAATTTTGGGCTT-AACGAGCAGAGCT 644 |||| ||||||||| |||||| | |||||| ||||||||| ||||| |||||||| |||| Sbjct 528 GAGGAATCCTGGTATGGATACTACTGACTTCTTTAATTTT-GGCTTGAACGAGCAAAGCT 586 Query 645 GGAAAGATTACTGTAAACCGTTGGGAAGAGCAATTGAGGTTAGAGGTGGTACTCTTGAGC 704 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 587 GGAAAGATTACTGTAAACCGTTGGGAAGAGCAATTGAGGTTGGAGGTGGAACTCTTGAGC 646 Query 705 GAATACCTTCTGCAGATTTGCGTCGTCCACGTGATCCTGACCCTGGCGTGGTGATACAGA 764 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 647 GAATACCTTCTGCAGATTTGCGTCGTCCACGTGATTCAGACCCTGGCGTGGTGATACAGA 706 Query 765 TCCCAGTTACTAATGATGTTGAGGAGCTACCAGTCAGGACACCTGAGAAAGCAAGATGCA 824 ||| |||||||||||||||||||||||| || ||| ||||||||||| |||||| |||| Sbjct 707 TCCTTGTTACTAATGATGTTGAGGAGCTATCAATCATGACACCTGAGAGAGCAAGGTGCA 766 Query 825 TAACATCAAATGAAGCATCTAGAAGTGACGTTTCTCATTCATATGGTAGCAAGGATTTGA 884 |||||||||||||||||||||||||||||| |||||||||| ||| || || ||||||| Sbjct 767 TAACATCAAATGAAGCATCTAGAAGTGACGATTCTCATTCAAATGACAGGAATGATTTGA 826 Query 885 ATTCAGTCTATGGTTCTCCAAAAGATGAAGCTTTTGTGGGGTGTCAAGAAGAAAACGCTG 944 |||||||| ||| ||||||||||||||||||||||||||| | ||||||| ||||||||| Sbjct 827 ATTCAGTCGATGATTCTCCAAAAGATGAAGCTTTTGTGGGCTATCAAGAAAAAAACGCTG 886 Query 945 GAAGTTTCAGTGGCGAGAAATCTCTTCCAACAGAGAATTGCTGCAGTAGGGAAGCAACAC 1004 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 887 CAAGTTTCAGTGGCGAGAAATCTCCTCCAACAGAGAATTGCTGCAGTAGGGAAGTGACAC 946 Query 1005 CTAGTGATAAGGAAATGCTTGAGAAGGAGAAAGAAGAGAGTGTTTGCAATTCTGATGAGA 1064 ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| Sbjct 947 CTAGTGATAAGGAAATGCTTGAGGAGGAGAAAGTAGAGAGTTTTTGCAATTCTGATGAGA 1006 Query 1065 CGGATCCATCCTCAGTGGAGAGGGAATCATCTCTTGGAGATCGCATTCGTTTGAGCCCTA 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 CGGATCCATCCTCAGTGGAGAGGGAATCATCTCTTGGAGATCGCATTCGTTTGAGCCCTA 1066 Query 1125 CCTCTTCTT-CTTCTGTTGGTATAAATGAGGAATCTGATGATTATGAAACAGAGTCATTG 1183 ||||||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1067 CCTCTTCTTGCT-CTGCTGGTAAAAATGAGGAATCTGATGATTATGAAACAGAGTCATTG 1125 Query 1184 AAAGACAGTGCTACTGATGACCAACGTGAAGTCAGTACCCCACCACAAGAAGCTAGACTT 1243 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1126 AAAGACAGTGCTACTGATGACCAACGTGAAGTCAGTACCCCACCACAACAAGCTAGACTT 1185 Query 1244 GCAGAACATGAAGCAATTAGTATCAAAAGAGGGG-AAGATAGTGGTACAATGCATTCTAG 1302 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1186 GCAGAACATGAAGCAATTAGTATCAAAAGAGGGGGAA-ATAGTGGTACAATGCATTCTAG 1244 Query 1303 ACACAGAAGATCTCACGAAGACTCCAGCAAAAGGCACTGTGGGAGAGCTGGTTATGCTCG 1362 || |||||||||||||||||| || |||||||||||||||||||||||||| |||||| | Sbjct 1245 ACCCAGAAGATCTCACGAAGATTCAAGCAAAAGGCACTGTGGGAGAGCTGGCTATGCTGG 1304 Query 1363 CTATGTTAAGGATGCATCGCCTACACCAGATCCTGGTCGTGGGAAGAAAGTTGGTTCTCT 1422 |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 1305 CTATGTTAAGGATGCATCGCCTACACCAGATCCTGGTCGTGGCAAGAAAGTTCGTTCTCG 1364 Query 1423 ACA-GG--GCTTGTATCGTGATTCAAACAAAAACTGGCAGAATGGACCACCTATTACATT 1479 ||| || | |||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1365 ACATGGAAGTTTGTATCGTGATTCAAACAAAAACTGGCAGAATGGACCACGTCTTACATT 1424 Query 1480 AGAGAGGGATGAAACTGAAGGTAAAGGCGTTCATTACTATAGAGAAAAATCTCATGGTAG 1539 ||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| Sbjct 1425 AGAAAGGGATGAAACTGAAGGTAAAGGCGTTCATTACTGTAGAGAAAATTGTCATGGTAG 1484 Query 1540 ATTGAATTCATCTGTGGATCATGATAGGCATAGAGAGCACAGGTTTGGTTGGCGGAACAA 1599 |||| |||||||||||||||||| || ||||||| ||||||||||||||||||| |||| Sbjct 1485 ATTGTATTCATCTGTGGATCATGCTAAGCATAGAAAGCACAGGTTTGGTTGGCGCAACAT 1544 Query 1600 CAAAGAATCATCACTCGGTCGAGGTTTTGATCATTCTAATAGTTACAAGTGTGGGACGCA 1659 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1545 CAAAGAATCATCACTGGGTCGAGGTTTTGATCATTCTAATAGTTACAAGTGTGGGGCGCA 1604 Query 1660 TCTTAAAGAGTATACCTCACGTTCATCCTTCGATCTTAATCAGAGAAATTCTAGATCAAG 1719 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1605 TCCTAAAGAGTATACCTCACGTTCATCCTTCGGTCTTAATCAGAGAAATTCTAGATCAAG 1664 Query 1720 TTTTAAAGAAGAGGATGATCGATATGGTTGGCATCATCGTGAAAGAAAATATGTTCATGA 1779 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 1665 TTTTAAAGAAGAGGATGATCGATATGGTTGGCATCATTGTGAAAGAAAATATGGTCATGA 1724 Query 1780 AAGAAGTCCTATCCGAGCATATGAAAACTACAAAGAAAGAAATGGGTGTGATTGGCTAAG 1839 |||||||||| ||||||| || |||||||||||||||||||||||||| || ||||||| Sbjct 1725 AAGAAGTCCTGTCCGAGCCTACGAAAACTACAAAGAAAGAAATGGGTGCAATAGGCTAAG 1784 Query 1840 AGAACCTTATTATGAGGACTGTATACCGATTACTGACATGGATTATAGGTACCGGTCAGA 1899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1785 AGAACCTTATTATGAGGACTGTATACCGATTACTGACATGGATTATAGGTACCGGTCAGA 1844 Query 1900 GAACTCGTCTGCACATGCAATACACAACCTCAAGCACAGTCCAGAGAATGATCTTTATTG 1959 || | |||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1845 TTACACTTCTGCACATGCAATACACAACCTCAATCAGAGTCCAGAGAATGATCTTTATTG 1904 Query 1960 CAGAAGAAGGGGTGGATACGATTATAATTTGCATCGTGATAGATATGAAGATGGAGTTCA 2019 ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| Sbjct 1905 CAGAAGAAGGGGTGGATACGATTCTAATTTGCATCGCCATAGATATGAAGATGTAGTTCA 1964 Query 2020 CAGGGTAGAAAGTAGAATTCCATTTGAGCTGGCGTACAGGGAGATGCGTTCTTTTGCTGA 2079 ||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||| Sbjct 1965 CAGGGCAGAAAGTAGAATTCCATTTGAGCTGGCTTACAGGGAGGTGTGTTCTTTTGCTGA 2024 Query 2080 AGTGGAAATGAGAGAATATCAAGGGTATAAAAGACATGAGGAATTCTCTGAAATAGAGAA 2139 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2025 AGTGGAAATGAGAGAATATCAAGGGTATAAAAGGCATGAGGAATTCTCTGAAATAGAGAA 2084 Query 2140 AAGACATCATTACATTCATGATTGGCATCTTGATAGATTTGTCTCAGAGGAAGATGGTTA 2199 ||||| ||||||| |||||||||| ||||||||||||||||||||||| |||||| || Sbjct 2085 AAGACGCCATTACACTCATGATTGGAATCTTGATAGATTTGTCTCAGAGAAAGATGATTG 2144 Query 2200 TAAGTATAGAATCCAAGATGGTTGGTCCTCACCGTCTTTATCTTTGAGAGATTCTTGGTA 2259 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2145 TAAGTATAGAACCCAAGATGATTGGTCCTCACCGTCTTTATCTTTGAGAGATTCTTGGTA 2204 Query 2260 TACCAAAGAAGCAAAAGGTGATTTCCGGAGAGATGATACCAGAGACTTCAGAACACCTGA 2319 ||||||||||||||||||||||||| ||||||||||| | |||||||| |||||| |||| Sbjct 2205 TACCAAAGAAGCAAAAGGTGATTTCTGGAGAGATGATGCTAGAGACTTTAGAACAGCTGA 2264 Query 2320 AGCATATGACAGCCAGAATAACCATTTTCATAAGGCTGCACCGAGAGATGG-CTGGACGC 2378 ||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||| Sbjct 2265 AGCATATGACAACCAGAATAACCAGTTTCATAAGGCTGCACCGAGAGATGGTC-GGACGC 2323 Query 2379 AGAATCTTGGTCGTAGCCATAATGTGAGCGTAAAAGATAGACTACAGTATGATGCTGATT 2438 ||||||||||||||||| ||||||||||| |||||||||||||| || |||||| ||||| Sbjct 2324 AGAATCTTGGTCGTAGCAATAATGTGAGCATAAAAGATAGACTAAAGGATGATGATGATT 2383 Query 2439 GGGTTGGTCCTGATAGAGGAAGATATAATATGGCAGATGACATGCAATGTTCAATGAGAG 2498 ||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 2384 GGGTTTGTCCTGATAGAGGAAGATATAATACGGCAGATGACATTCAATGTTCAATGAGAG 2443 Query 2499 AAGTTTCTAATTCTGAGCATCCATCATATACTGATGAGATATT 2541 ||||| || |||||||||||||||||||||||||||||||||| Sbjct 2444 AAGTTACTTATTCTGAGCATCCATCATATACTGATGAGATATT 2486 Score = 544 bits (294), Expect = 2e-153 Identities = 420/475 (88%), Gaps = 31/475 (7%) Strand=Plus/Plus Query 2612 CATATTCATGAAAATGATGAAAGACATCACAGATCCAAGAAGCTGAGAGGAGATGGGCAT 2671 ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| || Sbjct 2491 CATATTCGTGAAAATGATGAGAGACATCACAAATCCAAGAAGCTGAGAGGAGATGGGAAT 2550 Query 2672 GCTTTCATCAAGCGTCAGGAT-CATGTTGACTTAGCTGGTAGGCAAGGAAAG-GTCTCTA 2729 |||||||||||||||||||| || ||||||||||||||||||||||||||| | ||| | Sbjct 2551 TCTTTCATCAAGCGTCAGGATCCA-GTTGACTTAGCTGGTAGGCAAGGAAAGCG-CTCAA 2608 Query 2730 ACCAATCaaaaaaaaGATTCTCCAATGGCGGAGATACAATCGAGCAACAAGATGTTCAGA 2789 |||||||||| ||||||||||||||| | | ||||||||||||| |||| | Sbjct 2609 ACCAATCAAACAAAAGATTCTCCAAT----G-G-------CGAGCAACAAGATCTTCAAA 2656 Query 2790 AACCAAGAAAGTTAATGGGCAAAAGCGAAGAGAAAGCTATGCAGAATCGAGATATAAATG 2849 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2657 AACCAAGAAAGTTAGTGGGCAAAAGCGAAGAGAAAGCTATGCAGACTCGAGATATAAATG 2716 Query 2850 ACAAAGAAGAAGGCGAGAT-A-A-TAG-A---A-GAA-GTGAAAGGTGTTGAAATAGACA 2900 ||||||||||||||||||| | | || | | ||| |||||||||||||||||||||| Sbjct 2717 ACAAAGAAGAAGGCGAGATCATAGAAGAAGCGACGAACGTGAAAGGTGTTGAAATAGACA 2776 Query 2901 ATGAACGTATACAAGAGAGTCTGAAAAAGATGGAGAAACGGAGGGAGAGGTTCAAGGGAA 2960 |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 2777 ATGAGCGTATACAAGAGAGCCTGAAGAAGATGGAGAAACGGAGGGAGAGGTTCAAGGGAA 2836 Query 2961 CCAAATTGGCG-G-----TAGAAGCGACATTCAAATCTCAAACTGAACTGAGAGCTAAAG 3014 ||||| ||||| | ||||||| |||||||||||| |||| ||| |||||||||| Sbjct 2837 CCAAAATGGCGAGGACGGTAGAAGCCACATTCAAATCTGAAACCGAAAGGAGAGCTAAAA 2896 Query 3015 CCGATGTTACTAATCAACAGAGGCCAGTTAGAAAGAGGAGATGGTGTGCAAGTTA 3069 |||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 2897 CCGATGTTACTAATCAACAGAGACCGGTTAGAAAGAGGAGATGGTGTGCAAGTTA 2951 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115946705780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5