BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G66652.1
Length=3070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477974 jgi|Araly1|477974|fgenesh2_kg.3__675__AT3G66652.1 3458 0.0
> Ahg477974 jgi|Araly1|477974|fgenesh2_kg.3__675__AT3G66652.1
Length=2952
Score = 3458 bits (1872), Expect = 0.0
Identities = 2302/2503 (92%), Gaps = 55/2503 (2%)
Strand=Plus/Plus
Query 77 ATGGATTCTACTGATGATGATTTCGGTGACTTGTACGTTGATGATGCCAAGTTTCAGGCG 136
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGATTCTACTGATGATGATTTCGGTGACTTGTACGTTGATGATGCCAAGGTTCAGGCC 60
Query 137 ACTGATGCTT---TCGA--A--TCGGA---G-----T-GTGCTACGAACTC----CG-GC 175
| |||||||| ||| | | ||| | | |||| | ||| || | ||
Sbjct 61 AGTGATGCTTCCGCCGACGATGTAGGATTCGTAAAATCGTGCAAAGAA-TCGGAATGTGC 119
Query 176 GA-GGA-T-AAG-GGTTTTGAAGAGACGGTAAAGTCTGATTCGGAAGGTGAAGTGAAGAA 231
| | | | || | |||||||| ||||||||| |||||| |||||||||| |||||||
Sbjct 120 TACGAATTCCAGCGATTTTGAAGGGACGGTAAAACCTGATTTGGAAGGTGAAATGAAGAA 179
Query 232 ATTTGATGTTGTTGCTAAGGATTCGAGTCCGTGTGACGACGACGATTGTGCTATGAATCT 291
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 180 ATTTGATGTTGTTGCTAAGGATTCGAGTCCGTGT---GACGACGATTGTGCTGTGAATCT 236
Query 292 GACTGAGGCCGATGAAGAATCGGAA-TT--T---AGTGATAGTGATGATGATTTGAATAT 345
||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 237 GACTGAGGCCGATGAAGAATCGGAATTTAGTGACAGTGATAGTGATGATGATTTGAATAT 296
Query 346 AGTGCTCAAAGACGACGACTCTAAAGCCCTTCCTGCTTCTTGTGTGTTTAACACCAACTT 405
|||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||
Sbjct 297 AGTGCTCAAAGACGACGATTCTAAACCCCTTCCTGCTGCTTGTGTCTTTAACACCAACTA 356
Query 406 TGGCGGATACGAAGCATCCAAAGCTTCCTCGTTTCAGAGACGGTGGACTAGAAACGCTTC 465
| || || | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 T---GG---CG--G-ATCCAAAGCTTGCTCGTTTCAGAGACGGTGGACTAGAAACGCTTC 407
Query 466 AGCTAATAATGCTTGCATCGATCCTTCTTTAGGAATGTCTCAATACAGATATAGTTTCCC 525
||||||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||| |
Sbjct 408 AGCTAATAACGCTTGCATTGATCCGTCTTTAGGAATGCCTCAATATGGATATAGTTTCTC 467
Query 526 AAACCCTTGGTCCAGGACACCTTTTGATGTAAATCTCGATGTGTTAGAGAAGAAGCCATG 585
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 468 AAACCCTTGGTCCAGGACACCTTTTGACGTAAATTTCGATGTGTTTGAGAAGAAGCCATG 527
Query 586 GAGGGATCCTGGTACGGATACCAGTGACTTTTTTAATTTTGGGCTT-AACGAGCAGAGCT 644
|||| ||||||||| |||||| | |||||| ||||||||| ||||| |||||||| ||||
Sbjct 528 GAGGAATCCTGGTATGGATACTACTGACTTCTTTAATTTT-GGCTTGAACGAGCAAAGCT 586
Query 645 GGAAAGATTACTGTAAACCGTTGGGAAGAGCAATTGAGGTTAGAGGTGGTACTCTTGAGC 704
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 587 GGAAAGATTACTGTAAACCGTTGGGAAGAGCAATTGAGGTTGGAGGTGGAACTCTTGAGC 646
Query 705 GAATACCTTCTGCAGATTTGCGTCGTCCACGTGATCCTGACCCTGGCGTGGTGATACAGA 764
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 647 GAATACCTTCTGCAGATTTGCGTCGTCCACGTGATTCAGACCCTGGCGTGGTGATACAGA 706
Query 765 TCCCAGTTACTAATGATGTTGAGGAGCTACCAGTCAGGACACCTGAGAAAGCAAGATGCA 824
||| |||||||||||||||||||||||| || ||| ||||||||||| |||||| ||||
Sbjct 707 TCCTTGTTACTAATGATGTTGAGGAGCTATCAATCATGACACCTGAGAGAGCAAGGTGCA 766
Query 825 TAACATCAAATGAAGCATCTAGAAGTGACGTTTCTCATTCATATGGTAGCAAGGATTTGA 884
|||||||||||||||||||||||||||||| |||||||||| ||| || || |||||||
Sbjct 767 TAACATCAAATGAAGCATCTAGAAGTGACGATTCTCATTCAAATGACAGGAATGATTTGA 826
Query 885 ATTCAGTCTATGGTTCTCCAAAAGATGAAGCTTTTGTGGGGTGTCAAGAAGAAAACGCTG 944
|||||||| ||| ||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 827 ATTCAGTCGATGATTCTCCAAAAGATGAAGCTTTTGTGGGCTATCAAGAAAAAAACGCTG 886
Query 945 GAAGTTTCAGTGGCGAGAAATCTCTTCCAACAGAGAATTGCTGCAGTAGGGAAGCAACAC 1004
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 887 CAAGTTTCAGTGGCGAGAAATCTCCTCCAACAGAGAATTGCTGCAGTAGGGAAGTGACAC 946
Query 1005 CTAGTGATAAGGAAATGCTTGAGAAGGAGAAAGAAGAGAGTGTTTGCAATTCTGATGAGA 1064
||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 947 CTAGTGATAAGGAAATGCTTGAGGAGGAGAAAGTAGAGAGTTTTTGCAATTCTGATGAGA 1006
Query 1065 CGGATCCATCCTCAGTGGAGAGGGAATCATCTCTTGGAGATCGCATTCGTTTGAGCCCTA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CGGATCCATCCTCAGTGGAGAGGGAATCATCTCTTGGAGATCGCATTCGTTTGAGCCCTA 1066
Query 1125 CCTCTTCTT-CTTCTGTTGGTATAAATGAGGAATCTGATGATTATGAAACAGAGTCATTG 1183
||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1067 CCTCTTCTTGCT-CTGCTGGTAAAAATGAGGAATCTGATGATTATGAAACAGAGTCATTG 1125
Query 1184 AAAGACAGTGCTACTGATGACCAACGTGAAGTCAGTACCCCACCACAAGAAGCTAGACTT 1243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1126 AAAGACAGTGCTACTGATGACCAACGTGAAGTCAGTACCCCACCACAACAAGCTAGACTT 1185
Query 1244 GCAGAACATGAAGCAATTAGTATCAAAAGAGGGG-AAGATAGTGGTACAATGCATTCTAG 1302
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1186 GCAGAACATGAAGCAATTAGTATCAAAAGAGGGGGAA-ATAGTGGTACAATGCATTCTAG 1244
Query 1303 ACACAGAAGATCTCACGAAGACTCCAGCAAAAGGCACTGTGGGAGAGCTGGTTATGCTCG 1362
|| |||||||||||||||||| || |||||||||||||||||||||||||| |||||| |
Sbjct 1245 ACCCAGAAGATCTCACGAAGATTCAAGCAAAAGGCACTGTGGGAGAGCTGGCTATGCTGG 1304
Query 1363 CTATGTTAAGGATGCATCGCCTACACCAGATCCTGGTCGTGGGAAGAAAGTTGGTTCTCT 1422
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1305 CTATGTTAAGGATGCATCGCCTACACCAGATCCTGGTCGTGGCAAGAAAGTTCGTTCTCG 1364
Query 1423 ACA-GG--GCTTGTATCGTGATTCAAACAAAAACTGGCAGAATGGACCACCTATTACATT 1479
||| || | |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1365 ACATGGAAGTTTGTATCGTGATTCAAACAAAAACTGGCAGAATGGACCACGTCTTACATT 1424
Query 1480 AGAGAGGGATGAAACTGAAGGTAAAGGCGTTCATTACTATAGAGAAAAATCTCATGGTAG 1539
||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1425 AGAAAGGGATGAAACTGAAGGTAAAGGCGTTCATTACTGTAGAGAAAATTGTCATGGTAG 1484
Query 1540 ATTGAATTCATCTGTGGATCATGATAGGCATAGAGAGCACAGGTTTGGTTGGCGGAACAA 1599
|||| |||||||||||||||||| || ||||||| ||||||||||||||||||| ||||
Sbjct 1485 ATTGTATTCATCTGTGGATCATGCTAAGCATAGAAAGCACAGGTTTGGTTGGCGCAACAT 1544
Query 1600 CAAAGAATCATCACTCGGTCGAGGTTTTGATCATTCTAATAGTTACAAGTGTGGGACGCA 1659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1545 CAAAGAATCATCACTGGGTCGAGGTTTTGATCATTCTAATAGTTACAAGTGTGGGGCGCA 1604
Query 1660 TCTTAAAGAGTATACCTCACGTTCATCCTTCGATCTTAATCAGAGAAATTCTAGATCAAG 1719
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1605 TCCTAAAGAGTATACCTCACGTTCATCCTTCGGTCTTAATCAGAGAAATTCTAGATCAAG 1664
Query 1720 TTTTAAAGAAGAGGATGATCGATATGGTTGGCATCATCGTGAAAGAAAATATGTTCATGA 1779
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1665 TTTTAAAGAAGAGGATGATCGATATGGTTGGCATCATTGTGAAAGAAAATATGGTCATGA 1724
Query 1780 AAGAAGTCCTATCCGAGCATATGAAAACTACAAAGAAAGAAATGGGTGTGATTGGCTAAG 1839
|||||||||| ||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct 1725 AAGAAGTCCTGTCCGAGCCTACGAAAACTACAAAGAAAGAAATGGGTGCAATAGGCTAAG 1784
Query 1840 AGAACCTTATTATGAGGACTGTATACCGATTACTGACATGGATTATAGGTACCGGTCAGA 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 AGAACCTTATTATGAGGACTGTATACCGATTACTGACATGGATTATAGGTACCGGTCAGA 1844
Query 1900 GAACTCGTCTGCACATGCAATACACAACCTCAAGCACAGTCCAGAGAATGATCTTTATTG 1959
|| | |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1845 TTACACTTCTGCACATGCAATACACAACCTCAATCAGAGTCCAGAGAATGATCTTTATTG 1904
Query 1960 CAGAAGAAGGGGTGGATACGATTATAATTTGCATCGTGATAGATATGAAGATGGAGTTCA 2019
||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct 1905 CAGAAGAAGGGGTGGATACGATTCTAATTTGCATCGCCATAGATATGAAGATGTAGTTCA 1964
Query 2020 CAGGGTAGAAAGTAGAATTCCATTTGAGCTGGCGTACAGGGAGATGCGTTCTTTTGCTGA 2079
||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 1965 CAGGGCAGAAAGTAGAATTCCATTTGAGCTGGCTTACAGGGAGGTGTGTTCTTTTGCTGA 2024
Query 2080 AGTGGAAATGAGAGAATATCAAGGGTATAAAAGACATGAGGAATTCTCTGAAATAGAGAA 2139
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2025 AGTGGAAATGAGAGAATATCAAGGGTATAAAAGGCATGAGGAATTCTCTGAAATAGAGAA 2084
Query 2140 AAGACATCATTACATTCATGATTGGCATCTTGATAGATTTGTCTCAGAGGAAGATGGTTA 2199
||||| ||||||| |||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 2085 AAGACGCCATTACACTCATGATTGGAATCTTGATAGATTTGTCTCAGAGAAAGATGATTG 2144
Query 2200 TAAGTATAGAATCCAAGATGGTTGGTCCTCACCGTCTTTATCTTTGAGAGATTCTTGGTA 2259
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2145 TAAGTATAGAACCCAAGATGATTGGTCCTCACCGTCTTTATCTTTGAGAGATTCTTGGTA 2204
Query 2260 TACCAAAGAAGCAAAAGGTGATTTCCGGAGAGATGATACCAGAGACTTCAGAACACCTGA 2319
||||||||||||||||||||||||| ||||||||||| | |||||||| |||||| ||||
Sbjct 2205 TACCAAAGAAGCAAAAGGTGATTTCTGGAGAGATGATGCTAGAGACTTTAGAACAGCTGA 2264
Query 2320 AGCATATGACAGCCAGAATAACCATTTTCATAAGGCTGCACCGAGAGATGG-CTGGACGC 2378
||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 2265 AGCATATGACAACCAGAATAACCAGTTTCATAAGGCTGCACCGAGAGATGGTC-GGACGC 2323
Query 2379 AGAATCTTGGTCGTAGCCATAATGTGAGCGTAAAAGATAGACTACAGTATGATGCTGATT 2438
||||||||||||||||| ||||||||||| |||||||||||||| || |||||| |||||
Sbjct 2324 AGAATCTTGGTCGTAGCAATAATGTGAGCATAAAAGATAGACTAAAGGATGATGATGATT 2383
Query 2439 GGGTTGGTCCTGATAGAGGAAGATATAATATGGCAGATGACATGCAATGTTCAATGAGAG 2498
||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 2384 GGGTTTGTCCTGATAGAGGAAGATATAATACGGCAGATGACATTCAATGTTCAATGAGAG 2443
Query 2499 AAGTTTCTAATTCTGAGCATCCATCATATACTGATGAGATATT 2541
||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2444 AAGTTACTTATTCTGAGCATCCATCATATACTGATGAGATATT 2486
Score = 544 bits (294), Expect = 2e-153
Identities = 420/475 (88%), Gaps = 31/475 (7%)
Strand=Plus/Plus
Query 2612 CATATTCATGAAAATGATGAAAGACATCACAGATCCAAGAAGCTGAGAGGAGATGGGCAT 2671
||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 2491 CATATTCGTGAAAATGATGAGAGACATCACAAATCCAAGAAGCTGAGAGGAGATGGGAAT 2550
Query 2672 GCTTTCATCAAGCGTCAGGAT-CATGTTGACTTAGCTGGTAGGCAAGGAAAG-GTCTCTA 2729
|||||||||||||||||||| || ||||||||||||||||||||||||||| | ||| |
Sbjct 2551 TCTTTCATCAAGCGTCAGGATCCA-GTTGACTTAGCTGGTAGGCAAGGAAAGCG-CTCAA 2608
Query 2730 ACCAATCaaaaaaaaGATTCTCCAATGGCGGAGATACAATCGAGCAACAAGATGTTCAGA 2789
|||||||||| ||||||||||||||| | | ||||||||||||| |||| |
Sbjct 2609 ACCAATCAAACAAAAGATTCTCCAAT----G-G-------CGAGCAACAAGATCTTCAAA 2656
Query 2790 AACCAAGAAAGTTAATGGGCAAAAGCGAAGAGAAAGCTATGCAGAATCGAGATATAAATG 2849
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2657 AACCAAGAAAGTTAGTGGGCAAAAGCGAAGAGAAAGCTATGCAGACTCGAGATATAAATG 2716
Query 2850 ACAAAGAAGAAGGCGAGAT-A-A-TAG-A---A-GAA-GTGAAAGGTGTTGAAATAGACA 2900
||||||||||||||||||| | | || | | ||| ||||||||||||||||||||||
Sbjct 2717 ACAAAGAAGAAGGCGAGATCATAGAAGAAGCGACGAACGTGAAAGGTGTTGAAATAGACA 2776
Query 2901 ATGAACGTATACAAGAGAGTCTGAAAAAGATGGAGAAACGGAGGGAGAGGTTCAAGGGAA 2960
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2777 ATGAGCGTATACAAGAGAGCCTGAAGAAGATGGAGAAACGGAGGGAGAGGTTCAAGGGAA 2836
Query 2961 CCAAATTGGCG-G-----TAGAAGCGACATTCAAATCTCAAACTGAACTGAGAGCTAAAG 3014
||||| ||||| | ||||||| |||||||||||| |||| ||| ||||||||||
Sbjct 2837 CCAAAATGGCGAGGACGGTAGAAGCCACATTCAAATCTGAAACCGAAAGGAGAGCTAAAA 2896
Query 3015 CCGATGTTACTAATCAACAGAGGCCAGTTAGAAAGAGGAGATGGTGTGCAAGTTA 3069
|||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2897 CCGATGTTACTAATCAACAGAGACCGGTTAGAAAGAGGAGATGGTGTGCAAGTTA 2951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115946705780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5