BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G66654.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477975 jgi|Araly1|477975|fgenesh2_kg.3__676__AT3G66654.3 1478 0.0
> Ahg477975 jgi|Araly1|477975|fgenesh2_kg.3__676__AT3G66654.3
Length=1402
Score = 1478 bits (800), Expect = 0.0
Identities = 901/948 (95%), Gaps = 14/948 (1%)
Strand=Plus/Plus
Query 116 GAGACAAGTTGTATCCCTCGTTTGCTTTCTGC-GAAACTAAGGTGC-AATGGCGAAGATA 173
|||||||||||||| | ||||||| |||| |||| |||||| | |||||||||||||
Sbjct 462 GAGACAAGTTGTATTCGTCGTTTG----CTGCAGAAAATAAGGT-CAAATGGCGAAGATA 516
Query 174 AAACCGCAGGCTCTTCTAAATCAAAGCAAGAAGAAGAAGGGTCCAAGTCGCATAAGTATT 233
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AAACCTCAGGCTCTTCTAAATCAAAGCAAGAAGAAGAAGGGTCCAAGTCGCATAAGTATT 576
Query 234 TCCACTATTATTGTCTGTAATCTTGTAGTTGCTGTAGTCATATTATCGTTGGTCACAACC 293
||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 577 TCCACTATTATCGTCTGTAATCTTGTAGTTGCTGTAGTCATACTATCCTTGGTCACTACT 636
Query 294 TATCGCCATTGGTCCCAAAGGTCAAGAAACACAATTGAACATGAAACTCGGAGTCAGAGA 353
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 637 TATCGCCATTGGTCCCAAAGGTCAAGAAACACAATTGAACATGAAACTCAGAGTCAGAGA 696
Query 354 TTTGAGGACACTAATACTGCGTCAGGGCAAAAAACTTACGATCTTCCTGGTTTTGCTGAT 413
||||||||||| |||||||| |||| ||||||||||||||| |||||||||| |||||||
Sbjct 697 TTTGAGGACACAAATACTGCATCAGAGCAAAAAACTTACGACCTTCCTGGTTATGCTGAT 756
Query 414 ATAAACACATCAAAAGGACTTATAACTGTCGAACTCTTCAAAGAAGGTTCCCCTGAAGTT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 ATAAACACATCAAAAGGACTTATAACTGTCGAACTCTTCAAAGAAGGTTCCCCTGAAGTT 816
Query 474 GTGGACAAGTTTCTAGATCTATGTCAAAAAGATCACTTCAAGGGAATGCCGTTTCAGCGG 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 817 GTGGACAAGTTTCTAGATCTATGTCAAAAAGATCACTTCAAGGGAATGCCGTTTCATCGG 876
Query 534 GTTATAAAGAACTACTTGGTACAAGCTGGTCACTCACCGAGCTCTATACCTGTAGAAGAA 593
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GTTATAAAAAACTACTTGGTACAAGCTGGTCACTCACCGAGCTCTATACCTGTAGAAGAA 936
Query 594 TGGACAGCTAAAGGAAAGCTCAGAGGTCGCCTTCACATTGGCCCAAAACATGAGGCATTC 653
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 937 TGGACAGCTAAAGGAAAGCTCCGTGGTCGCCTTCACATAGGCCCAAAACATGAGGCATTC 996
Query 654 ATGTTGGGAACACCAAAAAACAAAGGGAACAACAAGGATTTTGAGCTTCTGATCACAACG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ATGTTGGGAACACCAAAAAACAAAGGGAACAACAAGGATTTTGAGCTTCTGATCACAACG 1056
Query 714 GCCCCAATCCCGGATCTGAATGATCAACTTATAGTGTTTGGAAGAGTCCTTAAGGGAGAG 773
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1057 GCGCCAATCCCGGATCTGAATGATCAGCTTATAGTGTTTGGAAGAGTCCTTAAGGGAGAG 1116
Query 774 GATGTAGTACAGGAGATCGAAGAAGTGGATACGGATGAGCATTTCCAACCGAAATCGCCA 833
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1117 GATGTAGTACAGGAGATCGAAGAAGTGGATACGGATGAGCATTACCAACCGAAATCGCCA 1176
Query 834 ATAGGGATCACTGGTGTTGTACTGAAACTAGAGACATGAAATGAAAATTTCTCTTCCTT- 892
|||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 1177 ATAGGGATCACTGGTGTTGTACTGAAACGAGAGATATGAAATGAAAATCTCTCTTCCTTC 1236
Query 893 GCT-T--CCTCTGTAAATGAGGCTCACGCCAAATCCTTCTTCATACTCGCtcttttgtat 949
| | | ||||||||||||||||||||||||| || |||||||||||| || ||| ||||
Sbjct 1237 GTTGTTTCCTCTGTAAATGAGGCTCACGCCAAGTCTTTCTTCATACTCACTGTTT-GTAT 1295
Query 950 aaatcctcttttgaggttttttctt-tctttctattttacagtttcttgttgttttgtaa 1008
||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1296 AAACCCTCTTTTGAGGTTTTTTTTTCTCTTTCTATTTTACAGTTTCTTGTTGTTTTGTAA 1355
Query 1009 ttttatttgatttttctCGAGGAAATAGAATCTTTGTTTAATTATGCT 1056
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TTTT-TTTGATTTTTCTCGAGGAAATAGAATCTTTGTTTAATTATGCT 1402
Score = 167 bits (90), Expect = 2e-40
Identities = 114/124 (92%), Gaps = 8/124 (6%)
Strand=Plus/Plus
Query 1 CACGCGGCTGATCTGAA--G-CGTCTC--TGCAAAAGAGAAAAGAGAGCAGAGAATTCAA 55
||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||
Sbjct 54 CACGCGGCTGATCTGAAGCGTCGTCTCTGTGCAAAAGAGAAAAGGGAGCAGAGAATTCAA 113
Query 56 ACCAGTTTCCATCGACGCAACGACCAATCTCCACGATTCCTCTCTTCT--CT-CTAACTT 112
||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 114 ACCAGTTTCCATCGACGAAACGACCAATCTCCACGATTCCTCTCTTCTTTCTTCTAACTT 173
Query 113 CCAG 116
||||
Sbjct 174 CCAG 177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5