BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G66656.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477978 jgi|Araly1|477978|fgenesh2_kg.3__679__AT3G66656.1          787    0.0  


> Ahg477978 jgi|Araly1|477978|fgenesh2_kg.3__679__AT3G66656.1
Length=516

 Score =  787 bits (426),  Expect = 0.0
 Identities = 488/518 (94%), Gaps = 4/518 (1%)
 Strand=Plus/Plus

Query  22   ATGGAGAAAGTGCAAGACACAAACACGAAGCAAGTTACCTTCTCAAAACGTAGGCTGGGT  81
            |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct  1    ATGGAGAAAGTGCAAGACACAAACACAAAGCAAGTTACCTTCTCGAAGCGTAGGCTGGGT  60

Query  82   TTGTTCAAGAAAGCGAGCGAGCTTGCGACTCTGTGCAACGCGGAGGTTGGTATTGTTGTC  141
            ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  61   TTGTTCAAGAAAGCGAGTGAGCTTGCGACGCTGTGCAACGCCGAGGTTGGTATTGTTGTC  120

Query  142  TTTTCTCCAGGAAACAAACCGTATTCCTTCGGGAAACCGAATTTTGATGTGATTGCAGAA  201
            |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  121  TTTTCTCCAGGAAACAAACCTTATTCCTTCGGGAAACCGAATTTTGATTTGATTGCAGAA  180

Query  202  CGGTTTAAGAATGAATTCGAAGAAGAAGAAGAAGGAGATAGCTGTGAAACATCAGGCTAT  261
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  CGGTTTAAGAATGAATTCGAAGAAGAAGAAGAAGCAGATAGCTGTGAAACATCAGGCTAT  240

Query  262  AGTAGAGGCAATAGAGCTAGACAGGAGAAGAAGATATGTAAACGCCTCAACTCGATTA-C  320
            ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct  241  AGTAGAGGCAAGAGAGCTAGACAAGAGAAGAAGATATGTAAACGCCTCAACTCGATCATC  300

Query  321  TGAAGAAGCTGAAGCTGAGAAGAAACATGGTGAAGATCTTCACAAGTGGCTTGAATCTGC  380
             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  301  -GAAGAAGCTGAAGCTGAGAAGAAACATGGAGAAGATCTTCACAAGTGGCTTGAATCTGC  359

Query  381  TGAACAGGATAAGTTCAATAAGCCCATTGAGGAGCTTACGCTTGAGGAACTCAAGGAATT  440
            | |||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct  360  TCAACAAGATAGGTTTAATAAGCCCATTGAGGAGCTTACTCTTGAGGAGCTCAAAGAATT  419

Query  441  TGAGGCTAAGATT-AAGAAAATAAGCTGTGGGATCCAAAGTAACATTAGTCATATGCAGG  499
            ||| ||||||||| ||||||  ||| |||||||| ||||||||||||| |||||||||||
Sbjct  420  TGAAGCTAAGATTCAAGAAAC-AAGGTGTGGGATTCAAAGTAACATTAATCATATGCAGG  478

Query  500  CTTCGTCTTCTCTCATGTTTCTCTCTAATGATAATTAG  537
            |||||||||||||||||||||||||||| |||||||||
Sbjct  479  CTTCGTCTTCTCTCATGTTTCTCTCTAAGGATAATTAG  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5