BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G66658.2
Length=2165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477980 jgi|Araly1|477980|fgenesh2_kg.3__681__AT3G66658.2 3232 0.0
Ahg923735 jgi|Araly1|923735|scaffold_105016.1 145 2e-33
> Ahg477980 jgi|Araly1|477980|fgenesh2_kg.3__681__AT3G66658.2
Length=2108
Score = 3232 bits (1750), Expect = 0.0
Identities = 1956/2048 (96%), Gaps = 43/2048 (2%)
Strand=Plus/Plus
Query 4 AAATCCATCA-GCTCTTCGTTGATTCCTATTTCTATTTTTCCGATTGACGGAGACGCCGA 62
|||||||| | ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1 AAATCCAT-ATGCTCTTCGTTGATTCCTATTTCTATTTTTCCGATT------GACG--GA 51
Query 63 GATTTATCCTTCATCGGCGTTGTCTTTTCGCTGGATTTCTCAAAGCCCTAGCTGAAGAAT 122
|||||||||||||| | | || | ||||||||||||||||||||||||
Sbjct 52 GATTTATCCTTCAT---C---G-------GC--G--TTCTCAAAGCCCTAGCTGAAGAAT 94
Query 123 CTCTGAACAAGTGGAAATGCCGTTTTGGTGGCCACTGATCGTCCTCGCCTTCGCTTACGC 182
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 95 CTCTGAACAAGTGGAAATGTCGTTCTGGTGGCCACTGATCGTTCTCGCCTTCGCTTACGC 154
Query 183 GATCTGCAAGTTCCTTCTTATGCTCATTCCTCCCAATGTTCCTTCCATTGACGTTGACGC 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 155 GATCTGCAAGTTCCTTCTTATGCTCATTCCTCCCAATGTTCCTTCCATTGACGTAGACGC 214
Query 243 ATCCGATGTGTTGGCTCATGGGAAAGATACGGAGGAGAATAGCTTCATCTATATTCCTCC 302
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 215 ATCCGATGTGTTGGCTCATGGGAAAGATACGGAGGAGAATAGCTTCATTTATATTCCTCC 274
Query 303 CAGAGGAAGGAGCCAACAGTCTGACAAAAAAGTTCAATGTTATGAACCTGCCACAATGAA 362
||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 275 GAGAGGCAGGAGCCAACAGTCAGACAAAAAAGTTCAATGCTATGAACCTGCTACAATGAA 334
Query 363 ATATCTGGGATATTTCCCTGCTCTGTCGCCTACTGAGGTCGAGGAGCGCGTAACACTATC 422
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 335 ATATCTCGGATATTTCCCTGCTCTGTCGCCTACTGAGGTTGAGGAGCGAGTAACACTATC 394
Query 423 AAGGAAGGCTCAAAAGACATGGGCTCAAAGTAGCTTCAAGCTTAGAAGGCAGTTCTTGCG 482
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 395 AAGGAAGGCTCAAAAGACATGGGCTCAAAGTAGCTTCAAGCTAAGAAGGCAGTTCTTGCG 454
Query 483 GATTCTTCTTAAGTACATTATTGAACACCAAGAGCTTATATGCGAAGTCTCTTCACGTGA 542
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 455 GATTCTTCTAAAGTACATTATTGAACACCAAGAGCTTATATGCGAAGTCTCATCACGTGA 514
Query 543 TACTGGAAAGACTATGGTAGATGCGTCCCTGGGAGAAATTATGACTACTTGTGAGAAAAT 602
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 515 TACCGGAAAGACTATGGTAGATGCGTCCCTGGGAGAAATAATGACTACTTGTGAGAAAAT 574
Query 603 TACTTGGCTTCTTTCTGAGGGCGAACGATGGTTAAAGCCTGAATCTCGTTCTTCAGGAAG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TACTTGGCTTCTTTCTGAGGGCGAACGATGGTTAAAGCCTGAATCTCGTTCTTCAGGAAG 634
Query 663 AGCTATGCTTCATAAAGTATCACGAGTAGAGTTCCATCCCCTTGGTGTCATTGGAGCTAT 722
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 635 AGCTATGCTTCATAAAGTATCAAGAGTAGAGTTCCATCCCCTTGGTGTCATTGGAGCTAT 694
Query 723 AGTCCCATGGAATTATCCCTTCCACAATATTTTCAACCCTATGCTGGCTGCAGTCTTCTC 782
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 695 AGTCCCATGGAATTATCCCTTCCACAATATTTTCAATCCTATGCTGGCTGCAGTCTTCTC 754
Query 783 TGGGAATGGCATTGTTATTAAGGTTTCAGAACACGCTAGCTGGTCGGGATGCTTTTACTT 842
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GGGGAATGGCATTGTTATTAAGGTTTCAGAACACGCTAGCTGGTCGGGATGCTTTTACTT 814
Query 843 CCGCATAATCCAGGCAGCTTTAGCTGCTGTTGGAGCACCAGAAAATCTAGTCGATGTGAT 902
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 815 CCGCATAATCCAGGCAGCTTTAGCTGCTGTTGGAGCACCTGAAAATCTAGTCGATGTGAT 874
Query 903 AACAGGGTTTGCGGAGACCGGAGAAGCACTTGTCTCATCTGTTGATAAAATGATATTTGT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 AACAGGGTTTGCGGAGACCGGAGAAGCACTTGTCTCATCTGTTGATAAAATGATATTTGT 934
Query 963 TGGATCCACAGCTGTTGGCAAGATGATAATGAGAAATGCTGCCGAGACATTGACACCTGT 1022
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 935 TGGATCCACAGCTGTTGGCAAAATGATAATGAGAAATGCAGCCGAGACATTGACACCTGT 994
Query 1023 CACTCTTGAGCTTGGTGGAAAAGATGCATTTATCATATGTGAAGACGCAGATGTCTCACA 1082
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CACACTTGAGCTTGGTGGAAAAGATGCATTTATCATATGTGAAGACGCAGATGTCTCACA 1054
Query 1083 TGTTGCACAAGTGGCTGTAAGGGGCACTCTTCAGTCCAGCGGGCAAAACTGTGCCGGTGC 1142
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1055 TGTTGCTCAAGTGGCTGTAAGGGGCACTCTTCAGTCCAGCGGGCAAAACTGTGCAGGTGC 1114
Query 1143 TGAAAGATTTTATGTCCACAAAGACATTTATACTGCATTCATTGGCCAAGTAACCAAGAT 1202
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1115 TGAAAGATTTTATGTTCACAAAGACATTTATACTGCATTCATTAGCCAAGTAACCAAGAT 1174
Query 1203 TGTGAAGTCAGTTTCTGCTGGTCCTCCTCTAACTGGAAGGTATGACATGGGAGCTATATG 1262
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1175 TGTGAAGTCAGTTTCTGCTGGTCCTCCTCTAACCGGGAGGTATGACATGGGTGCTATATG 1234
Query 1263 TTTGCAAGAGCACTCTGAACACCTACAGAGCCTTGTAAATGACGCCTTAGACAAAGGAGC 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 TTTGCAAGAGCACTCTGAACACCTACAGAGCCTTGTAAATGACGCCTTAGACAAAGGAGC 1294
Query 1323 TGAAATTGCAGTCCGTGGCAGCTTTGGTCATCTGGGGGAAGATGCAGTCGATCAATATTT 1382
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1295 AGAAATTGCAGTCCGTGGCAGCTTTGGTCATTTGGGCGAAGATGCAGTCGATCAATATTT 1354
Query 1383 CCCTCCAACTGTTCTCATCAATGTGAACCACAACATGAAAATAATGAAAGAAGAGGCTTT 1442
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1355 CCCTCCAACTGTTCTCATCAATGTAAACCACAACATGAAAATAATGAAAGAAGAGGCTTT 1414
Query 1443 TGGACCAATAATGCCAATCATGCAATTCAGCACCGATGAAGAGGTCATAAAGCTGGCAAA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 TGGACCAATAATGCCAATCATGCAATTCAGCACCGATGAAGAGGTCATAAAGCTGGCAAA 1474
Query 1503 TGATTCACGTTATGCTCTAGGCTGTGCTGTTTTCTCTGGAAGCAAGCATCGCGCCAAACA 1562
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TGATTCACGTTATGCGCTAGGCTGTGCTGTTTTCTCTGGAAGCAAGCATCGCGCCAAACA 1534
Query 1563 AATAGCTTCTCAAATTCAGTGCGGTGTTGCTGCAATCAATGACTTTGCATCAAATTACAT 1622
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1535 AATAGCTTCTCAAATTCAGTGCGGTGTTGCTGCAATCAATGACTTTGCCTCAAATTACAT 1594
Query 1623 GTGCCAGTCGCTCCCGTTTGGAGGTGTAAAGGATAGTGGGTTTGGACGGTTTGCTGGAAT 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1595 GTGCCAGTCGCTCCCGTTTGGAGGTGTAAAGGATAGTGGGTTTGGACGGTTTGCTGGTAT 1654
Query 1683 AGAAGGTTTAAGAGCATGCTGTCTTGTGAAATCGGTGGTTGAAGATAGATTTTGGCCACT 1742
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1655 AGAAGGTTTAAGAGCATGCTGCCTTGTGAAATCGGTGGTTGAAGATAGATTTTGGCCACT 1714
Query 1743 CATCAAGACCAAGATTCCAAAACCTATTCAGTATCCGGTAGCAGAAAACGCATTTGAATT 1802
||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1715 CATCAAGACCAAGATTCCAAAACCTATTCAGG--CA---A-CAGAAAACGCATTTGAATT 1768
Query 1803 CCAGGAGGCCCTAGTCGAAACTCTTTATGGACTCAACATTTGGGACCGGCTAAGATCCCT 1862
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1769 CCAGGAGGCACTAGTCGAAACTCTTTACGGACTCAACATTTGGGACCGGCTAAGATCCCT 1828
Query 1863 AATCGATGTCCTCAAGTTCCTTACCGATCAGAGCTCTAACGTGAGCAGAACTAGAAAGAG 1922
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1829 AATCGATGTCCTCAAGTTCCTTACCGATCAGAGCTCTAATGTGAGCAGAACTAGAAAGAG 1888
Query 1923 CCACTGAAGACCAATGACGAAAAACTTGGTGTCCAC-----A--TAAAACCTTTACTCTT 1975
||||||| || ||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1889 CCACTGAGGATTAATGACGAAAA-CTTGGTGTCCACTGTCCACATAAAACCTTTACTCTT 1947
Query 1976 TACATGCGTCAGCTGAGTTGCTGATATTGCAAAGCTAATTTTGGATAAT-AGTGAGCATT 2034
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1948 TACATGCGTCAGCTGAGTTGCTGATATTGCAAAGCTAATTTTG-ATTATTAGTGAGCATT 2006
Query 2035 TTGGGTTT 2042
||||||||
Sbjct 2007 TTGGGTTT 2014
Score = 156 bits (84), Expect = 8e-37
Identities = 93/97 (96%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 2067 tttttttttttGCCT-GGAAGGGCGATTTGTGACTTGTGAAATATTTGAAAATCCACTTT 2125
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2013 TTTTTTTTTTTG-CTCGGAAGGGCGATTTGTGACTTATGAAATATTTGAAAATCCACTTT 2071
Query 2126 TGCGCTGTCTTATAATAGGAAACTGTTGTTTGGTCTC 2162
|||| ||||||||||||||||||||||||||||||||
Sbjct 2072 TGCGTTGTCTTATAATAGGAAACTGTTGTTTGGTCTC 2108
> Ahg923735 jgi|Araly1|923735|scaffold_105016.1
Length=291
Score = 145 bits (78), Expect = 2e-33
Identities = 89/94 (95%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 158 TGATCGTCCTCGCCTTCGCTTACGCGATCTGCAAGTTCCTTCTTATGCTCATTCCTCCCA 217
||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 76 TGATCGTTCTCGCCTTCGCTTACGCGATCTGCAAATTCTTTCTTATGCTCATTCCTCCCA 135
Query 218 ATGTTCCTTCCATTGACGTT-GACGCATCCGATG 250
||||||||||||||||| || |||||||||||||
Sbjct 136 ATGTTCCTTCCATTGAC-TTAGACGCATCCGATG 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81475034055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5