BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00026.1
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943763 jgi|Araly1|943763|scaffold_604307.1 1415 0.0
Ahg490565 jgi|Araly1|490565|fgenesh2_kg.6__3699__AT4G01710.1 80.5 2e-14
> Ahg943763 jgi|Araly1|943763|scaffold_604307.1
Length=930
Score = 1415 bits (766), Expect = 0.0
Identities = 870/919 (95%), Gaps = 11/919 (1%)
Strand=Plus/Plus
Query 69 TCAGAGATGATGATGATGAATCTTTTAAGGAGATCAGCGATAGCCATCGGCCGCCAATCA 128
|||||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||
Sbjct 16 TCAGAGATGATGATGATGAACCTTCTAAGGAGATCAGCGATGGCCATCGGCCACCAATCA 75
Query 129 AAATCGAAACTGGCGTCGTTTTCCTCCGCTACACAACCTTGTTCCGGAATCCCAAAATCG 188
|| ||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct 76 AAGTCGAAACTGGCTTCGTTTTCTTCCGCTTCACAACCTTGTTCTGGAATCCCAAAATCG 135
Query 189 TCCA-AGAGGGTTTTTAGCAA-CTCA-TTTCTTTCAA---AGGACTCTACTGGAGCTAAT 242
| | | || | ||||| ||| | | |||| ||||||||||||||||||||
Sbjct 136 TTGATA-AGCG-TTTTACCAAGAGGAGGAGC-ATCAAGGCAGGACTCTACTGGAGCTAAT 192
Query 243 GGACTATTGTTTCGCTTCCGAAACCCGCAAGCAAGTATATGTACGGAAGCTCGTCCAAAG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GGACTATTGTTTCGCTTCCGAAACCCGCAAGCAAGTATATGTACGGAAGCTCGTCCAAAG 252
Query 303 AACATCAACTCATCTTACTTTACCAGATCTTTTGCATCAAGAACTTCAAAAGAACCTGGG 362
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 253 AACATCAACTCATCTTACTTTACGAGATCTTTTGCATCAAGAACTTCTAAAGAACCTGGG 312
Query 363 AATCAGCAGAATAAGGCTAAGAAAGAGGTGACGACTGTGGAGGATCCTTTTGATTCTCCT 422
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 313 AATCAGCAGAATAAGGCTAAGAAAGAGGTGACAACGGTGGAGGATCCTTTTGATTCTCCT 372
Query 423 ACATACCACATCCCGGAGAAGCCGGTGACCTTTACAGAAGGTGCGTCCTACAGTCTTGTT 482
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 373 ACGTACCACATCCCGGACAAGCCGGTGACCTTTACAGAAGGTGCTTCCTACAGTCTTGTT 432
Query 483 ATTCTGGCTGGGCTTGGTGTCGCTGGAGCTGCTGGCTACGGTGTGTTTAAAGAGCTCATT 542
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 433 ATTCTGGCTGGGCTTGGGGTCGCTGGAGCTGCTGGGTACGGTGTGTTTAAAGAGCTCATA 492
Query 543 TTTCAACCAAAAGAGTACAAGGTCTTTGACAAAGCCTTGAAGAGAATTCAAGATGATGGT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TTTCAACCAAAAGAGTACAAGGTCTTTGACAAAGCCTTGAAGAGAATTCAAGATGATGGT 552
Query 603 CAGGTGAGGGTTAGGATTGGATCCCCCATCAAAGGCTATGGACAAGAAACTAGAAACCGA 662
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 553 CAGGTGAGGGTTAGGATTGGATCCCCCATCAAAGGCTATGGACAAGAAACCAGAAACCGC 612
Query 663 GCTGCTCGTCAACGTATACCCAACAGAGTATTTACAGATGAAGACGGAGTGGAGCATGTT 722
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 613 GCTGCTCGTCAACGTATACCCAATAGAGTATTTACAGATGAAGACGGAGTGGAGCATGTT 672
Query 723 GAGGTAAACTTCTACATCCGTGGGCCTCAAGGAGCAGGGAAAGTGTACACGGAGATGTTT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GAGGTAAACTTCTACATCCGTGGGCCTCAAGGAGCAGGGAAAGTGTACACGGAGATGTTT 732
Query 783 AAAGACAAGGCAGAGAAGGAATGGAAATACACGTACCTGATCGTAGAGATTTTAACACCT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AAAGACAAGGCAGAGAAGGAATGGAAATACACGTACCTGATCGTAGAGATTTTAACACCT 792
Query 843 TCCCCAGCCAAATTGATGCTGGAGTCTTATTTGCCTGCCTAAAGCACTCGTATT-TATGA 901
|||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||
Sbjct 793 TCCCCAGCCAAATTGATGTTGGAGTCTTACTTGCCTGCCTAAA-CACTCGTATTATATGA 851
Query 902 CTCAGCAGATCCGGAAAACATTCAGAAACGGCTTAGATTGTTTTAGTTGGGGTGTTGGAG 961
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TTCAGCTGATCCGGAAAACGTTCAGAAACGGCTTAGATTGTTTTAGTTGGGGTGTTGGAG 911
Query 962 AAAAGAGAGAGAATTGTGT 980
|||||||||||||||||||
Sbjct 912 AAAAGAGAGAGAATTGTGT 930
> Ahg490565 jgi|Araly1|490565|fgenesh2_kg.6__3699__AT4G01710.1
Length=499
Score = 80.5 bits (43), Expect = 2e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 1007 TTATCAAGCAACTGTTTGCTAATTGAAAAACAAGTCTAAACTG 1049
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TTATCAAGCAACTGTTTGCTAATTGAAAAACAAGTCTAAACTG 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43383879546
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5