BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00040.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490563 jgi|Araly1|490563|fgenesh2_kg.6__3697__AT4G00040.1 2043 0.0
Ahg470071 jgi|Araly1|470071|fgenesh2_kg.1__25__AT1G02050.1 887 0.0
> Ahg490563 jgi|Araly1|490563|fgenesh2_kg.6__3697__AT4G00040.1
Length=1347
Score = 2043 bits (1106), Expect = 0.0
Identities = 1247/1316 (95%), Gaps = 5/1316 (0%)
Strand=Plus/Plus
Query 7 TTCATTGTGAACTCACAAAGATGTTGGTGTCCGCAAGGGTAGAGAAACAAAAGCGTGTTG 66
|||| ||||| || | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TTCACTGTGACCTTAAAAAGATGTTGGCGTCCGCAAGGGTAGAGAAACAAAAGCGTGTTG 60
Query 67 CTTATCAGGGGAAGGCGACAGTGCTTGCTCTCGGTAAGGCCTTGCCGAGCAATGTTGTTT 126
| ||||||||||| || ||| |||||||||||||||||||||| || |||||||||||||
Sbjct 61 CATATCAGGGGAAAGCAACACTGCTTGCTCTCGGTAAGGCCTTCCCCAGCAATGTTGTTT 120
Query 127 CCCAGGAGAATCTCGTGGAGGAGTATCTCCGTGAAATCAAATGCGATAACCTTTCTATCA 186
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 121 CCCAGGAGAATCTCGTGGAGGATTATCTCCGTGAAATCAAATGTGATGACCTTTCTATCA 180
Query 187 AAGACAAGCTGCAACACTTGTGCAAAAGCACAACTGTCAAGACACGCTACACAGTCATGT 246
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGACAAGCTGCAACACTTGTGTAAAAGCACAACTGTCAAGACACGCTACACAGTCATGT 240
Query 247 CACGGGAGACGCTGCACAAATACCCTGAACTAGCAACCGAGGGTTCCCCAACCATCAAAC 306
| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CTCGTGAGACGCTGCAAAAATACCCTGAACTAGCAATCGAGGGTTCCCCAACCATCAAAC 300
Query 307 AGAGGCTTGAGATTGCAAACGATGCGGTTGTGCAGATGGCATATGAAGCGAGCTTGGTTT 366
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAGGCTTGAGATTGCAAACGAAGCGGTTGTGCAGATGGCATATGAAGCGAGCTTGGTTT 360
Query 367 GCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATCTTGTCTACGTTTCCTCCA 426
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 361 GCATCAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATCTAGTCTATGTTTCCTCCA 420
Query 427 GTGAGTTCCGTTTGCCCGGAGGTGATCTTTACCTCTCGGCACAGCTGGGCCTTAGCAACG 486
||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 421 GTGAGTTCCGTTTGCCCGGAGGTGACCTCTACCTCTCGACACAGCTGGGCCTTAGCAACG 480
Query 487 AGGTTCAGAGAGTGATGCTGTATTTTCTTGGATGCTATGGAGGTTTGAGTGGGCTGCGCG 546
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 481 AGGTTCAGAGAGTGATGCTGTATTTTCTGGGATGCTATGGAGGTTTGAGCGGGCTGCGCG 540
Query 547 TGGCCAAAGACATTGCTGAGAACAACCCAGGGAGCCGTGTGTTGCTCACCACCTCTGAGA 606
|||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 541 TGGCTAAAGACATTGCCGAGAACAACCCAGGGAGCCGGGTGCTGCTCACCACCTCCGAGA 600
Query 607 CTACCGTTCTGGGGTTCCGCCCACCCAACAAAGCTCGTCCTTACAACTTAGTCGGGGCTG 666
|||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 601 CTACGGTTCTGGGGTTCCGCCCGCCCAACAAAGCTCGCCCTTACGACTTAGTCGGGGCTG 660
Query 667 CACTCTTTGGAGATGGAGCAGCTGCCCTGATCATCGGAGCAGACCCTACAGAGTCGGAAT 726
|||| |||||||| ||||||||||| || ||||||||||| ||||||| |||||| ||||
Sbjct 661 CACTGTTTGGAGACGGAGCAGCTGCTCTAATCATCGGAGCTGACCCTAGAGAGTCTGAAT 720
Query 727 CTCCTTTCATGGAGCTTCACTGTGCTATGCAGCAGTTCCTGCCCCAAACACAGGGGGTGA 786
|||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 721 CTCCCTTCATGGAGCTTCACTGTGCTCTGCAGCAGTTCCTTCCCCAAACACAGGGGGTGA 780
Query 787 TCGACGGGCGGCTGTCAGAAGAGGGCATAACCTTCAAGCTAGGAAGAGACCTCCCTCAGA 846
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 781 TCGACGGGAGGCTGTCAGAAGAGGGAATAAGCTTCAAGCTAGGAAGAGACCTCCCTCAGA 840
Query 847 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTAGTGGCAAAGGCTGGCTCTGGTG 906
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTGGTGGCAAAGGCTGGCTCTGGTT 900
Query 907 CGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCTGGTGGACCAGCCATCCTGAGCG 966
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 CGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCGGGTGGACCAGCCATCCTGAGCG 960
Query 967 GGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGAATGCAGCAGAAGGGCGTTGA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGAATGCAGCAGAAGGGCGTTGA 1020
Query 1027 TGGATTATGGGAACGTAAGCAGCAACACCATCTTCTACATAATGGACAAAGTCAGAGATG 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1021 TGGATTATGGGAACGTAAGCAGCAACACCATCTTCTACATAATGGACAAAGTAAGAAATG 1080
Query 1087 AGCTTGAGAAGAAAGGCACAGAGGGAGAAGAGTGGGGTCTGGGCTTAGCTTTCGGACCGG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGCTTGAGAAGAAAGGCACAGAGGGAGAAGAGTGGGGTCTGGGCTTAGCTTTCGGACCGG 1140
Query 1147 GAATCACTTTCGAAGGCTTTCTCATGAGGAACCTCTAAATGTATATGAACTGGACATTT- 1205
|||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1141 GAATCACTTTCGAAGGCTTTCTCATGAGGAGCCTCTAAATGTCTATGAACCGGACATTTT 1200
Query 1206 CTCAACAAATAAAATATACAGGAACCGATGCTAACACACATACAT----CATGTAATGGT 1261
|| |||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||
Sbjct 1201 CTAAACAAATAAAATATTCAGGAACCGATGCCAACACACATACATGATACATGGAATGGT 1260
Query 1262 TGCATTAGTTTTGTTCTTTAATGGTAAATCACAGAAATACATCAATACAGTAAGTT 1317
|||||||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 1261 TGCATTAGTTTTGTTCTTCAATGGTAAATCATAGAAATGCATCAATACAGTAAGTT 1316
> Ahg470071 jgi|Araly1|470071|fgenesh2_kg.1__25__AT1G02050.1
Length=1291
Score = 887 bits (480), Expect = 0.0
Identities = 912/1117 (82%), Gaps = 43/1117 (4%)
Strand=Plus/Plus
Query 78 AAGGCGACAGTGCTTGCTCTCGGTAAGGCCTTGCCGAG-CAATGTTGTTTCC-CAGGAGA 135
||||| ||| |||||||||| || || ||||| || || ||| || | |||| |||||||
Sbjct 148 AAGGCAACACTGCTTGCTCTTGGCAAAGCCTTCCCAAGCCAA-GTCG-TTCCTCAGGAGA 205
Query 136 ATCTCGTGG-AGGAGTATCTCCGTGAAATCAAATGCGATAAC-CTTTCTATCAAAGACAA 193
|||| |||| |||| | ||| || || | |||||| ||| || | || ||||||||| ||
Sbjct 206 ATCTAGTGGAAGGA-TTTCTACGAGACACCAAATGTGATGACGCGTT-TATCAAAGAAAA 263
Query 194 GCTGCAACACTTGTGCAAAAGCACAACTGTCAAGACACGCTACACAGTCA-TGTCACGGG 252
| || ||||||||||||||| |||||| || ||||| |||||||| || | ||||||| |
Sbjct 264 GTTGGAACACTTGTGCAAAACCACAACCGTGAAGACGCGCTACACGGT-ATTGTCACGAG 322
Query 253 AGACGCTGCACAAATACCCTGAACTAGCAACCGAGGGTTCCCCAACCATCAAACAGAGGC 312
||| ||| | ||||||||||| ||| |||| |||||||| ||||| ||||| || || |
Sbjct 323 AGATACTGGATAAATACCCTGAGCTAACAACAGAGGGTTCACCAACAATCAAGCAAAGAC 382
Query 313 TTGAGATTGCAAACGATGCGGTTGTGCAGATGGCATAT-GAAGCGAGCTT-GGTTTGCAT 370
|||| ||||||||||| ||||||||| | ||||||| | ||||| || || || ||||||
Sbjct 383 TTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCAT-TGGAAGCCAGTTTAGG-TTGCAT 440
Query 371 CAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATC-TTGTCTACGTTTCCTCCAGTG 429
|||||||||||||||| |||||||||| |||||||| | |||||||||||||||| || |
Sbjct 441 CAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCA-CATTGTCTACGTTTCCTCAAGCG 499
Query 430 AGTTCCGTTTGCCCGGAGGTGATCTTTACCTCTCGGCACAGCTGGGCCTTAGCAACGAGG 489
|| |||| || ||||| ||||| ||||||||||| ||| |||| ||||| || || || |
Sbjct 500 AGATCCGATTACCCGGTGGTGACCTTTACCTCTCAGCAAAGCTAGGCCTGAGGAATGACG 559
Query 490 TTCAGAGAGTGATGCTGTATTTTCTTGGATGCTATGGAGGTTTGAGTGGGCTGCGCGTGG 549
| | |||||||||||||||||||| |||||||| |||||| ||| ||| || || ||||
Sbjct 560 TGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGGTGTGACTGGCCTCCGTGTGG 619
Query 550 CCAAAGACATTGCTGAGAACAACCCAGGGA-GCCGTGTGT-TGCTCACCACCTCTGAGAC 607
||||||||||||||||||||||||| |||| ||||||| | ||||||| |||||||| ||
Sbjct 620 CCAAAGACATTGCTGAGAACAACCC-GGGAAGCCGTGT-TCTGCTCACAACCTCTGAAAC 677
Query 608 TACCGTTCTGGGGTTCCGCCCACCCAACAAAGCTCGTCCTTACAACTTAGTCGGGGCTGC 667
||| |||| ||||| |||||||| |||||||||||||| ||| || |||| || |||||
Sbjct 678 CACCATTCTCGGGTTTCGCCCACCAAACAAAGCTCGTCCGTACGACCTAGTTGGAGCTGC 737
Query 668 ACTCTTTGGAGATGGAGCAGCTGCCCTGATCATCGGAGCAGACCCTACAGAGTCG-GAAT 726
|| ||||||||||| |||||||| | ||||||||||| || || | ||||| | |||
Sbjct 738 TCTGTTTGGAGATGGTGCAGCTGCTGTAATCATCGGAGCTGATCCGAGAGAGT-GTGAAG 796
Query 727 CTCCTTTCATGGAGCTTCACTGTGCTATGCAGCAGTTCCTGCCCCAAACACAGGGGGTGA 786
|||||||||||||||| |||| ||| | ||||||||| |||| |||||| ||||
Sbjct 797 CTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTCTTGCCGGGGACACAGAACGTGA 856
Query 787 TCGACGGGCGGCTGTCAGAAGAGGGCATAACCTTCAAGCTAGGAAGAGACCTCCCTCAGA 846
|||||||| || || | || || ||||||| ||||||||| ||| |||||||||| ||||
Sbjct 857 TCGACGGGAGGTTGACGGAGGAAGGCATAAACTTCAAGCTTGGACGAGACCTCCCGCAGA 916
Query 847 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCT-AGTGGCAAAGGCTGGCT--C-- 901
|||| || || ||| | || ||||||||||||||||| | ||| ||||||||| | |
Sbjct 917 AGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGA-TGGGAAAGGCTGG-TGGCGA 974
Query 902 TG-GTGCGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCTGGTGGACCAGCCATCC 960
|| || || ||||||| |||||| | ||||||||||||||||| || ||||| || || |
Sbjct 975 TGAGT-CGATGGAGTTCAATGACATGTTCTGGGCAGTTCATCCAGGAGGACCTGCGATTC 1033
Query 961 TGAGCGGGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGA-ATGCAGCAGAAGG 1019
||| | | ||||||||||| || |||||| || || |||||||| | |||||||||||
Sbjct 1034 TGAACCGTCTGGAGACAAAACTAAAGCTGGAGAAAGAGAAGCTGGAGA-GCAGCAGAAGG 1092
Query 1020 GCGTTGATGGATTATGGGAACGTAAGCAGCAACACCAT-CTTCTACATAATGGACAA-AG 1077
|||||| ||||||| |||||||| ||||||||||| || || || | ||||| | |
Sbjct 1093 GCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTG-TATGTGATGGAGTATA- 1150
Query 1078 TCAGAGATGAGCTTGA-GAAGAAAGGC-ACAG-AGGGAGAAGAGTGGGGTCTGGGCTTAG 1134
| ||||| ||||| || ||||||||| || | || | |||||||||| || |||||||
Sbjct 1151 TGAGAGAGGAGCT-GAAGAAGAAAGGTGAC-GCAGC-ACAAGAGTGGGGACTTGGCTTAG 1207
Query 1135 CTTTCGGACCGGGAATCACTTTCGAAGGCTTTCTCAT 1171
|||||||||| |||||||| ||||||||| |||||||
Sbjct 1208 CTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCAT 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5