BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00080.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490561 jgi|Araly1|490561|fgenesh2_kg.6__3695__AT4G00080.1 1129 0.0
> Ahg490561 jgi|Araly1|490561|fgenesh2_kg.6__3695__AT4G00080.1
Length=771
Score = 1129 bits (611), Expect = 0.0
Identities = 736/793 (93%), Gaps = 22/793 (3%)
Strand=Plus/Plus
Query 29 CTCTCAGTTAATTCTCTAATTCGCCATGGCGGCTAACAACAAATTGTTCTTTGTATTACT 88
|||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||||
Sbjct 1 CTCTCAGTTAATTCCCTAATTTTCCATGGCGGCTAACAACAAATTGACCCTCGTATTACT 60
Query 89 CTCCCTGTTCCCTCTCATCATCTTCTCGGCAACCGCCACGTCATCAAAAGACTACGACAC 148
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CTCCCTGCTCCCTCTCATCATCTTCTCGGCAACAGCCACGTCATCAAAAGACTACGACAC 120
Query 149 GAAGGCTTACGTGCACTCATGGTGCCGAACAACCTTATACCCGAAACTATGCGTCCGGTC 208
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 121 GAAGGCTTACGTGCACTCATGGTGCCGGACAACCTTATACCCGAAACTGTGCGTCCGGTC 180
Query 209 GATGTCTCGTTACGTGCGTTCACGCGCGGTGCAAAATCCACGGGATCTGGCCCGATTTGC 268
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 181 GATGTCTCGTTACGTGCGTTCACGGGCGGTGCAAAATCCACGGGATCTGGCCCGATTCGC 240
Query 269 GCTCAAAGCCAGCCTATATAGAGCTAAGTACACAAAGGCGTTCTTGTTAAAAGAGGTTAA 328
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 241 GCTCAAAGCCAGCCTATACAGAGCCAAGTACACAAAGGCGTTCTTGTTAAAAGAGGTAAA 300
Query 329 GAACTTGGAGACGACGTTGAGGCCCCAATACTACGCGTCGGTTCACGACTGCTTGGACCA 388
|||| | ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 301 GAACCTCGAGACGACGCTGAGGCCCCAATACTACGCGTTGGTTCACGACTGCTTGAACCA 360
Query 389 AATAAGAGACAGCGTGAACCAGTTGAGTCTAGCCATAGCGGAGCTAGACAGAGTCAGCAG 448
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 361 AATAAGAGACAGCGTGAACCAGCTGAGCCTAGCCATAGCGGAGCTAGACAGAGTCAGCAG 420
Query 449 GAGACAGGGAAAGAGCCAAGGGGATCTACACTGGCATATAAATAACCTGCAGACGTGGAC 508
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GAGGCAGGGAAAGAGCCAAGGGGATCTACACTGGCATATAAACAACCTGCAGACGTGGAC 480
Query 509 AAGCACAGCTCTTACAGACGCCGAGACTTGCGTGAGCCAGTTCCCGGGACGTAGGATGAG 568
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 481 AAGCACAGCTCTCACAGACGCCGAGACTTGCGTGAGTCAGTTCCCGGGACGGAGGATGAG 540
Query 569 CAAACTTAAGGCTACGATTAAAGGAAAAGTGAAGAATGTGGAGGAAACAACTAGTAATGC 628
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 CAAACTTAAGGCTACGATTAAAGGGAAAGTGAAGAATGTGGAGGAAACAACTAGTAATGC 600
Query 629 CCTTGCCTTCATCGAGCACTACGCTGCTGCTAGGTACCGAGCCAGACGTCCTTAAGCTGA 688
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 601 CCTTGCCTTCATCGAGCACTACGCTGCTGCTAGGTACCGAGCCAGACGTCCTTGAGTTGA 660
Query 689 GCCTGTGTGTGTGTTTTGATCATTTTGCCTTAAATTTCTTCTTACTTCTTGATATTTGTG 748
|||| |||||||||||||||||| ||| | ||| | | |||| ||
Sbjct 661 GCCT-TGTGTGTGTTTTGATCATCTTG--T-------CTT---A-------A-ATTT-TG 698
Query 749 TGTGTAATTGTTAACCAGTCGTGTAAATCCAAAAGTTCATATATGACCGTAAATTGATAT 808
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||
Sbjct 699 TGTGTAATTGTTAACCAGTTGTGTAAATCCAAAAGTTCATATATGACAGTAAATTGTTAT 758
Query 809 AATTCAATAACAA 821
|||||||||||||
Sbjct 759 AATTCAATAACAA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5