BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00100.1
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490559 jgi|Araly1|490559|fgenesh2_kg.6__3693__AT4G00100.1 1003 0.0
> Ahg490559 jgi|Araly1|490559|fgenesh2_kg.6__3693__AT4G00100.1
Length=650
Score = 1003 bits (543), Expect = 0.0
Identities = 608/639 (95%), Gaps = 5/639 (1%)
Strand=Plus/Plus
Query 37 TCTTCAGCAGTCAGTGCGCATCCGTAGGAGAAAAGTGTGAGAATCTGCCACCATGGGTCG 96
|||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1 TCTTCAGCAGTCAGTGAGCATCCATAGGAG-AAAGTGTGAGAATCTGCCACCATGGGTCG 59
Query 97 TATGCACAGTCGAGGAAAGGGTATTTCAGCCTCTGCGTTGCCTTACAAGAGATCGTCTCC 156
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 60 TATGCACAGTAGAGGAAAGGGTATTTCAGCTTCTGCGTTGCCTTACAAGAGACCGTCTCC 119
Query 157 GAGCTGGCTCAAGACCACCTCTCAGGATGTTGATGAATCAATCTGCAAATTTGCCAAAAA 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGCTGGCTCAAGACCACCTCTCAGGATGTTGATGAATCAATCTGCAAATTTGCCAAAAA 179
Query 217 GGGATTGACCCCTTCCCAGATTGGTGTGATTCTCCGTGACTCTCACGGTATCCCTCAGGT 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGGATTGACCCCTTCCCAGATTGGTGTGATTCTCCGTGACTCTCACGGTATCCCTCAGGT 239
Query 277 CAAGAGTGTTACTGGAAGCAAGATCTTGAGGATACTCAAAGCTCATGGCCTTGCTCCTGA 336
|||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 240 CAAGAGTGTTACAGGAAGCAAGATCCTGAGGATACTCAAAGCCCATGGCCTTGCTCCTGA 299
Query 337 GATCCCTGAGGATCTGTACCATCTAATTAAGAAGGCTGTTGCCATCCGTAAACATCTCGA 396
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GATCCCTGAGGATCTGTACCATCTTATTAAGAAGGCTGTTGCCATCCGTAAACATCTCGA 359
Query 397 GAGGAACAGGAAGGACAAGGATTCCAAGTTCAGGCTCATCTTGGTTGAGAGCAGGATTCA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGGAACAGGAAGGACAAGGATTCCAAGTTCAGGCTCATCTTGGTTGAGAGCAGGATTCA 419
Query 457 CCGCCTCGCTCGCTATTACAAGAAGACCAAGAAGCTCCCTCCCGTCTGGAAGTACGAATC 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCGCCTCGCTCGCTATTACAAGAAGACCAAGAAGCTCCCTCCCGTCTGGAAGTACGAATC 479
Query 517 CACTACCGCGAGCACCCTTGTGGCTTAAGCTGGAGTC--TGGAGGAGGATTCTACTAGTC 574
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 480 CACTACCGCGAGCACCCTTGTGGCTTAAGCTGGAGTTGGTGGAGGAAGATTCTACTAGTC 539
Query 575 TGTTGCTTCCCTTTTGTTTTGATGAATTCTCAACTTTAGTCTTAATGTGTCAGCAGGATT 634
|||||||||| ||||||||| ||||| ||| || ||||||||| |||||||| |||||||
Sbjct 540 TGTTGCTTCCTTTTTGTTTTCATGAAATCTGAATTTTAGTCTTCATGTGTCACCAGGATT 599
Query 635 TT-TGTGTTTGCCTCTCttttttttCCG-GAATCTTATG 671
| |||||||||||||| || ||| | ||||| ||||
Sbjct 600 TGATGTGTTTGCCTCTCCCTTCTTTAAGAGAATCGTATG 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26991025236
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5