BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00110.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943753 jgi|Araly1|943753|scaffold_604297.1 2169 0.0
Ahg935483 jgi|Araly1|935483|scaffold_403471.1 623 1e-177
> Ahg943753 jgi|Araly1|943753|scaffold_604297.1
Length=1330
Score = 2169 bits (1174), Expect = 0.0
Identities = 1264/1308 (97%), Gaps = 3/1308 (0%)
Strand=Plus/Plus
Query 196 ATGAAGCAAATGTCGCATCTTGATGATATTCCTTCGACGCCTGGCAAGTTCAAGCCCTAC 255
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 21 ATGAAGCAAATGTCGCATCTTGATGATATTCCTTCCACGCCTGGCAAGTTCAAGCCCTAC 80
Query 256 TTCCACCGTACGCGGTGGCAATCCTCCGTCGCCAAGCTCGCCTTTTGGTCTCTCGTCTTC 315
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TTCCACCGTACCCGGTGGCAATCCTCCGTCGCCAAGCTCGCCTTTTGGTCTCTCGTCTTC 140
Query 316 GTTGGTTTGATCTTCATCTTCTTCTACCGATCTCCCGTTTCCTCCAATCCCGCCGATCCT 375
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 141 GTTGGTTTGATCTTCATCTTCTTCTACCGATCTCCTGTTTCCTCCAAT--C-CCGATCCT 197
Query 376 TCTCGCCGTTCTCTTCGTACCTACTCCTGGGGTGGACCCGCTTGGGAGAAACGGGTCAGA 435
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 198 TCTCGCCGTTCTCTTCGTACCTACTCTTGGGGAGGACCCGCTTGGGAGAAACGGGTCAGA 257
Query 436 TCCTCCGCCCGTCTCCGTACCCGCCGCGGTTTCTCTGTTCTCGTCACCGGAGCCGCCGGT 495
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TCCTCCGCCCGTGTCCGTACCCGCCGCGGTTTCTCTGTTCTCGTCACCGGAGCCGCCGGT 317
Query 496 TTCGTCGGTACCCATGTCTCCGCCGCTCTCAAACGCCGCGGAGATGGCGTTCTGGGGCTT 555
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 318 TTCGTCGGTACCCATGTCTCCGCCGCTCTTAAACGGCGTGGAGATGGCGTTCTGGGACTG 377
Query 556 GACAACTTCAACGATTACTACGATCCATCGCTCAAGAGAGCAAGGCAAGCCCTTTTGGAG 615
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 378 GACAACTTCAACGATTACTACGATCCATCGCTAAAGAGAGCAAGGCAAGCCCTTTTGGAG 437
Query 616 AGAAGCGGAGTGTTTGTTGTTGAAGGAGACATCAATGACGCTGCTCTCTTGAAGAAGCTC 675
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGAAGCGGAGTCTTTGTGGTTGAAGGAGACATCAATGACGCTGCTCTCTTGAAGAAGCTC 497
Query 676 TTTGAAGTTGTTCCCTTTACCCACGTTATGCATTTGGCTGCTCAAGCTGGTGTCAGGTAC 735
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TTTGAAGTTGTCCCCTTTACCCACGTTATGCATTTGGCTGCTCAAGCTGGTGTCAGGTAC 557
Query 736 GCCATGGAAAATCCTAGCTCTTATGTTCACAGTAACATCGCTGGCTTCGTCAATCTCCTT 795
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 558 GCCATGGAAAATCCAAGCTCCTATGTTCACAGTAACATCGCTGGCTTCGTCAATCTCCTT 617
Query 796 GAGGTTTGCAAATCTGCCAATCCCCAACCCGCCATTGTCTGGGCTTCCTCTAGCTCTGTC 855
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GAGGTTTGCAAATCTGCTAATCCCCAACCCGCCATTGTCTGGGCTTCCTCTAGCTCTGTC 677
Query 856 TACGGGCTCAACACTAAGGTCCCCTTCTCCGAGAAAGACAGAACTGACCAACCAGCTAGT 915
|| || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 678 TATGGACTCAACACTAAAGTCCCCTTCTCCGAGAAAGACAGAACTGATCAACCGGCTAGT 737
Query 916 CTCTATGCTGCTACTAAGAAGGCTGGTGAAGAGATTGCTCACACTTACAATCACATCTAT 975
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 738 CTCTATGCTGCTACTAAGAAAGCTGGTGAAGAGATTGCTCACACTTACAATCACATCTAT 797
Query 976 GGACTCTCTCTTACTGGCTTGAGGTTTTTCACCGTCTATGGTCCTTGGGGAAGGCCTGAC 1035
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GGCCTTTCTCTTACTGGCTTGAGGTTTTTCACCGTCTATGGTCCTTGGGGAAGGCCTGAC 857
Query 1036 ATGGCCTATTTCTTCTTCACCAGAGACATTCTCAAAGGGAAAGCCATTTCAATCTTTGAG 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ATGGCCTATTTCTTCTTCACCAGAGACATTCTCAAAGGGAAAGCCATTTCAATCTTTGAG 917
Query 1096 GGGGTCAACCATGGAACCGTGGCTAGGGACTTCACTTACATTGATGACATTGTCAAGGGG 1155
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GGGGTCAACCATGGAACCGTGGCTAGGGACTTCACTTACATTGATGACATTGTCAAGGGC 977
Query 1156 TGTTTAGGGGCTTTGGACACGGCTGAGAAGAGCACTGGTAGTGGTGGTAAGAAGCGCGGT 1215
|| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 978 TGCTTGGGGGCTTTGGACACCGCTGAGAAGAGCACAGGTAGTGGTGGTAAGAAGCGCGGT 1037
Query 1216 GCGGCTCAGTTACGGGTTTTCAATCTCGGCAACACTTCGCCCGTTCCAGTGACTGATCTT 1275
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GCGGCTCAGTTACGGGTTTTCAATCTCGGCAACACTTCGCCCGTTCCAGTGACTGATCTG 1097
Query 1276 GTCACCATTCTTGAGAGACTTCTCAAAGTCAAGGCCAAGAGGAACATTATGAAGTTGCCG 1335
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1098 GTCACCATTCTCGAGAGACTTCTGAAAGTGAAGGCCAAGAGGAACATTATGAAGTTGCCG 1157
Query 1336 AGGAACGGGGATGTGCAGTTCACTCATGCTAATATCAGTTCTGCGCAGAGAGAGCTCGGC 1395
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1158 AGGAACGGGGATGTGCAGTTCACTCATGCTAATATCAGTTCCGCACAGAGAGAGCTCGGG 1217
Query 1396 TACAAACCCACCACCGATCTTCAGACGGGTCTCAAGAAGTTTGCGAGATGGTATTTGGGT 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TACAAACCCACCACCGATCTTCAGACGGGTCTCAAGAAGTTTGCGAGATGGTATTTGGGT 1277
Query 1456 TACTACAATGGCGGAAAGAAAGCTGCAAGCTGATGATTGACTATCTGC 1503
|||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 1278 TACTACAACGGCGGAAAGAAAGCTGCAAGTTGATGATTGACCATCTGC 1325
> Ahg935483 jgi|Araly1|935483|scaffold_403471.1
Length=1363
Score = 623 bits (337), Expect = 1e-177
Identities = 895/1160 (77%), Gaps = 55/1160 (5%)
Strand=Plus/Plus
Query 365 CCG-CCGATCCTTCTCGCCGTTCTCTTCGTACCTACTCCTGGGGTGGACCCGCTTGGGAG 423
||| ||||||| |||||||| || || || ||| || || || ||||| ||||||||
Sbjct 204 CCGTCCGATCCATCTCGCCGCTCACTCCGAACCAACAGCTACGGAGGACCAGCTTGGGAA 263
Query 424 AAACGGGTCAGATCCTCCGCCCGTCTCCGTACC-C-GC---C-GCGGTTTCTCTGTTCTC 477
||||| || ||||||| || || |||| ||| | | | ||| || | ||| |
Sbjct 264 AAACGTCTCCGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACAGTTTTA 323
Query 478 GTCACCGGAGCCGCCGGTTTCGTCGGTACCCATGTCTCCGCCGC-TCTCAAACGCCGCGG 536
||||||||||| || ||||||||||| || || ||||||||||| | | |||||||||||
Sbjct 324 GTCACCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGCAT-TAAAACGCCGCGG 382
Query 537 AGATGGCGTTCTGGGGCTTGACAACTTCAACGATTACTACGATCCATCGCTCAAGA-GAG 595
||| ||||| | || || ||||||||||||||||||||||||||||| || || | |||
Sbjct 383 AGACGGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAA-ACGAG 441
Query 596 CAAGGCAAGCCCTTT--TGGAGAGAAGCGG-AGTGTTTGTTGTTGAAGGAGACATCAATG 652
|||| ||||| ||| | || ||||| || | | || | || ||||||||||| || |
Sbjct 442 CAAGACAAGC--TTTGCTCGAAAGAAGTGGGA-TCTTCATCGTAGAAGGAGACATAAACG 498
Query 653 ACG-CTGC-TCT-CTT-GAAGAAGCTCTTTGAAGTT-GT-TCCCTTTACCCACGTTATGC 706
||| | | | | ||| | | | ||| || ||| | || ||| || || ||||||||||
Sbjct 499 ACGTC-GAAT-TGCTTCGTA-A-GCTATTC-AAGATCGTCTCC-TTCACACACGTTATGC 552
Query 707 ATTTGGCTGCTCAAGCTGGTGT-CAGGTACGCCATGGAAAATCCTAGCTCTTATGTTCAC 765
|||| || |||||||||||||| | ||||||| |||||||| |||||||||||||||||
Sbjct 553 ATTTAGCAGCTCAAGCTGGTGTAC-GGTACGCAATGGAAAACCCTAGCTCTTATGTTCAT 611
Query 766 AGTAACATCGCTGGCTTCGTCAATCTCCTTGAGGTTTGCAAATCTGCCAATCCCCAACCC 825
|| |||||||| || || ||||||||||| ||| | |||||||||| ||||| |||||
Sbjct 612 AGCAACATCGCCGGATTTGTCAATCTCCTCGAGATCTGCAAATCTGTGAATCCACAACCT 671
Query 826 GCCATTGTCTGGGCTTCCTCTAGCTCTGTCTACGGGCTCAACACTAAGGTCCCCTTCTCC 885
|| || ||||||||||| |||||||| |||||||| |||||||| || || || |||||
Sbjct 672 GCTATAGTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACGAAAGTTCCGTTCTCG 731
Query 886 GAGAAAGACAGAACTGACCAACCAGCTAGTCTCTATGCTGCTACTAAGAAGGCTGGTGAA 945
|||||||| | ||| || ||||| || ||| | || || || ||||| || || || |||
Sbjct 732 GAGAAAGATAAAACAGATCAACCGGCGAGTTTATACGCCGCGACTAAAAAAGCCGGCGAA 791
Query 946 GAGATTGCTCACACTTACAATCACATCTATGGACTCTCTCTTACTGGCTTGAGGTTTTTC 1005
||||| || || || || || |||||||||||| | ||||| || || || |||||||||
Sbjct 792 GAGATCGCACATACCTATAACCACATCTATGGATTATCTCTAACCGGATTAAGGTTTTTC 851
Query 1006 ACCGTCTATGGTCCTTGGGGAAGGCCTGACATGGCCTATTTCTTCTTCACCAGAGACATT 1065
|| || ||||| ||||||||||| || |||||||| |||||||||||||| | ||| |||
Sbjct 852 ACGGTGTATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATT 911
Query 1066 CTCAAAGGGAAAGCCATTTCAATCTTTGAGGGGGTC-AACCATGGAACCGTGGCTAGGGA 1124
|| ||||| ||| | ||||| || || || || | || || ||||| |||||||||||
Sbjct 912 CTAAAAGGCAAATCGATTTCGATATTCGAATCGG-CGAATCACGGAACGGTGGCTAGGGA 970
Query 1125 CTTCACTTACATTGATGACATTGTCAAGGGGTGTTTAGGGGCTTTGGACACGGCTGAGAA 1184
||||||||||| || || || || || || ||||||| ||| | || ||||| |||||
Sbjct 971 TTTCACTTACATCGACGATATAGTGAAAGGATGTTTAGCGGCGCTAGATACGGCGGAGAA 1030
Query 1185 GAGCACTGGTAGTGGTGGTAAGAAGCGCGGTGCGGCTCAGTT-ACGGGT-TTTCAATCTC 1242
||| || || ||||| || |||||| | ||| |||| || || | | || ||| || |||
Sbjct 1031 GAGTACAGGAAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGA-GAGTGTTT-AACCTC 1088
Query 1243 GGCAACACTTCGCCCGTTCCAGTGACTGATCTTGTCACCATTCTTG-AGAGACT-TCTCA 1300
|| ||||| ||||| || || || | ||||| || | || ||| |||||| | | |
Sbjct 1089 GGAAACACGTCGCCGGTGCCGGTTTCAGATCTGGTGAGAATA-TTGGAGAGACAAT-TGA 1146
Query 1301 AAGTCAAGGCCAAGAGGAACATT-ATGAAGTTGCCGAGGAA-CGGGGATGTGCAGTTCAC 1358
|||| ||||| |||| ||| || || ||| |||| | ||| ||| || || | ||| ||
Sbjct 1147 AAGTGAAGGCGAAGAAGAAT-TTGATTAAGATGCC-ACGAAACGGTGACGTTCCGTTTAC 1204
Query 1359 TCATGCTAATATCAGTTCT-GCGCAGA-GAGAGCTCGGCTACAAACCCACCACCGATCTT 1416
|||||||||||| |||| | || || | | ||||| || || ||||| || || ||| ||
Sbjct 1205 TCATGCTAATATTAGTT-TAGCTCA-ACGTGAGCTTGGTTATAAACCGACGACGGAT-TT 1261
Query 1417 -CAGACGGGTCTCAAGAAGTTTGCGAGATGGTATTTGGGTTACTACAATGGCG-GAAAGA 1474
|| || ||| | |||||||||| ||||||||||||| |||| ||| |||| |||| |
Sbjct 1262 GCAAACCGGTTTGAAGAAGTTTGTGAGATGGTATTTGAGTTATTACTCCGGCGAGAAA-A 1320
Query 1475 AAGCTGCAAGCT-GATGATT 1493
|||| || ||| |||||||
Sbjct 1321 AAGCCGCC-GCTAGATGATT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5