BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00114.1
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943752 jgi|Araly1|943752|scaffold_604296.1 749 0.0
Ahg906417 jgi|Araly1|906417|Al_scaffold_0003_3545 222 2e-57
> Ahg943752 jgi|Araly1|943752|scaffold_604296.1
Length=2245
Score = 749 bits (405), Expect = 0.0
Identities = 468/499 (94%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 25 ACTGCGCGTGCCTCCAAAGTTGCTGTAGAGAACAGAAAGAGGCCTTCGATCCTGGCTTTG 84
|||||| | || | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1728 ACTGCGGGGGCATACAAAGTTGCTGTAGAGAACAGAAAGAGGCCTTCGATCCTGGCTCTG 1787
Query 85 TCCAGACAAAAGCTGCCTCATCTACCTGGAACTTCGGTCGAGGTAGTGGTGAAGGGGGGA 144
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 1788 TCCAGACAAAAGCTGCCTCATCTACCTGGAACTTCGGTTGAGGGAGTGGAGAAGGGGGGA 1847
Query 145 TATGTAATCTCAGACAACTCCACAGGTGACAAAACTAGACGTAATCCTAATGGGGACAGG 204
||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||
Sbjct 1848 TATGTAATCTCAGACAACTCCACAGGTAAC-AAACCAGACGTAATCCTGATGGGGACAGG 1906
Query 205 GTCGGAGCTAGAGATAGCTGCAAAGGCTGGAGAGAAGCTAAGAGAAGAAAGAAAAGCAGT 264
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1907 GTCGGAGCTAGAGATTGCTGCAAAGGCTGGAGAGAAGCTAAGAGAAGAAGGAAGAGCAGT 1966
Query 265 GAGAGTAGTGTCATTGGTGAGTTGGGAGCTGTTTGATGAACAAAGAGAAGAATACAAAGA 324
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1967 GAGAGTAGTGTCACTGGTGAGTTGGGAGCTGTTTGATGAACAAAGCGAAGAATACAAAGA 2026
Query 325 AAGTGTGTTACCTTGAGAGGTTTCAGCAAGACTGAGCATTGAAGCAGGGTCGACCTTTGG 384
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2027 AAGTGTGTTACCTTCAGAGGTTTCAGCAAGAGTGAGCATTGAAGCAGGGTCGACCTTTGG 2086
Query 385 GTGGGAGAAGATGGTTGGCTCCAAAAGAAAAGCCATCGGTGTAGACAGTTT-GGAGCAAG 443
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 2087 GTGGGAGAAGATGGTTGGCTCCAAAGGAAAAGCCATCGGTGTAGACAGTTTTGGAGCAAG 2146
Query 444 TGCACCAGCCAATGTGCTCTACAGGAAATTTGGACTCACCGTGGATACGGTTATTGCAGC 503
||||||||| ||||||| |||| ||||||||||||||| || ||| ||||| |||||||
Sbjct 2147 TGCACCAGCGGATGTGCTGTACAAGAAATTTGGACTCACGGTTGATGCGGTTGTTGCAGC 2206
Query 504 CGCTAAAGACTTTTGTTAA 522
|||||||||| |||| |||
Sbjct 2207 CGCTAAAGACCTTTGCTAA 2225
> Ahg906417 jgi|Araly1|906417|Al_scaffold_0003_3545
Length=177
Score = 222 bits (120), Expect = 2e-57
Identities = 154/170 (91%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 230 GCTGGAGAGAAGCTAAGAGAAGAAAGAAAAGCAGTGAGAGTAGTGTCATTGGTGAGTTGG 289
||| |||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 10 GCTAGAGAGAAGCTGAGAGAAGAAGGAAGCGCAATGAGAGTAGTGTCATTGGTGAGTTGG 69
Query 290 GAGCTGTTTGATGAACAAAG-AGAAGAATACAAAGAAA-GTGTGTTACCTTGAGAGGTTT 347
|||||||||||| ||||||| | ||||||||||||||| | |||||||||| ||||||||
Sbjct 70 GAGCTGTTTGATAAACAAAGCA-AAGAATACAAAGAAAAG-GTGTTACCTTCAGAGGTTT 127
Query 348 CAGCAAGACTGAGCATTGAAGCAGGGTCGACCTTTGGGTGGGAGAAGATG 397
||| || | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 128 CAGGAAAAGTGAGCACTGAAGCAGGGTCGACCTTTGGGTGGGAGAAGATG 177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001483322
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5