BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00120.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490556 jgi|Araly1|490556|fgenesh2_kg.6__3690__AT4G00120.1 990 0.0
> Ahg490556 jgi|Araly1|490556|fgenesh2_kg.6__3690__AT4G00120.1
Length=1140
Score = 990 bits (536), Expect = 0.0
Identities = 578/598 (97%), Gaps = 3/598 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAATGGTATGTATAAAAAGAAAGGAGTGTGCGACTCTTGTGTCTCGTCCAAAAGC 60
||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1 ATGGAAAATGGTAAGTATAAAAAGAAAGGACTGTGCGACTCTTGTGTCTTGTCCAAAAGC 60
Query 61 AGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCACCATCTCCTCATG 120
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 AGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCATCAACTCCTCATG 120
Query 121 GATTGGAACAAAGCTAATGATCTTCTCACACAAGAACACGCAGCTTTTCTCAATGATCCT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 121 GATTGGAACAAAGCTAATGATCTTATCACACAAGAACACGCAGCTTTTCTCCATGATCCT 180
Query 181 CACCATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGACGAAGACGAAGAG 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ---CATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGAAGAAGACGAAGAG 237
Query 241 TACGATGAAGACATGGATGCGATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCC 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 238 TACGATGAAGACATGGATGCTATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCC 297
Query 301 GTAGACATCGACCCTGCCACGGTCCCTAAGCCGAACCGCCGTAACGTAAGGATAAGCGAC 360
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 298 GTAGACATCGACCCTGCCACCGTCCCTAAGCCGAACCGCCGTAACGTAAAGATAAGCGAC 357
Query 361 GATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATT 417
Query 421 CTCAAGAGGATCGTGCCTGGTGGTGCGAAGATGGACACAGCTTCCATGCTCGACGAAGCC 480
|||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||
Sbjct 418 CTCAAGAGGATCGTGCCTGGCGGTGCAAAGATGGACACAGCTTCGATGCTAGACGAAGCC 477
Query 481 ATACGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATCCGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATT 537
Query 541 GGAGCTCCTATGGCTAACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGAT 598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGAGCTCCTATGGCTGACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGAT 595
Score = 178 bits (96), Expect = 1e-43
Identities = 240/302 (79%), Gaps = 40/302 (13%)
Strand=Plus/Plus
Query 836 TATTGATTGTTAATTAGGGTTTGATCA-TTCTGTATGAAAGCTTTGGCCTGCAAATTAAT 894
||||||||| | ||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 697 TATTGATTG-T-ATTAGGGTTTGATCAGTT-TGTATGCAAGCTTTGGCCTGCAAATTAAT 753
Query 895 TTTCGatatatatatatatatatggagaatatatatCAAATACTTTTTTAATTTGACTAT 954
|| |||| | | | |||||||| || | || | ||||| ||| | |||||
Sbjct 754 TTCCGAT-GA-AGA-ATATATAT-----AT-CAAAT--AGTACTTGTTT-A----ACTAT 797
Query 955 AATTTGTATC-A--AT-TATCTGAATCTGATGAGTGTAGG-T-T--ATATAT--GGATTA 1004
|||||| ||| | || ||||||||||||||||||||||| | | |||||| ||||||
Sbjct 798 AATTTGAATCAATTATATATCTGAATCTGATGAGTGTAGGTTATAGATATATAGGGATTA 857
Query 1005 GCAAAAAA-GA---AAACAACCATTATTACGCACC-TACATTAAAAATCATCCA--CCAA 1057
|||||||| | ||||||| ||||||| || || || ||||||||||||||| |||
Sbjct 858 GCAAAAAACAATTGAAACAACGATTATTATGC-CCTTATATTAAAAATCATCCACCCCAT 916
Query 1058 AGAAGAAACCATCCTCAAGAGGGTTCCCATATTGGAGAATAATGAAAAATTTAAGAAGAA 1117
| || ||| | |||||||||||| ||||||||||||||||||||| |||| |||| ||
Sbjct 917 CG-AG-AACAAGACTCAAGAGGGTTTCCATATTGGAGAATAATGAAACATTTGAGAAAAA 974
Query 1118 AA 1119
||
Sbjct 975 AA 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5