BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G00120.1 Length=1533 Score E Sequences producing significant alignments: (Bits) Value Ahg490556 jgi|Araly1|490556|fgenesh2_kg.6__3690__AT4G00120.1 990 0.0 > Ahg490556 jgi|Araly1|490556|fgenesh2_kg.6__3690__AT4G00120.1 Length=1140 Score = 990 bits (536), Expect = 0.0 Identities = 578/598 (97%), Gaps = 3/598 (1%) Strand=Plus/Plus Query 1 ATGGAAAATGGTATGTATAAAAAGAAAGGAGTGTGCGACTCTTGTGTCTCGTCCAAAAGC 60 ||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 1 ATGGAAAATGGTAAGTATAAAAAGAAAGGACTGTGCGACTCTTGTGTCTTGTCCAAAAGC 60 Query 61 AGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCACCATCTCCTCATG 120 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 61 AGATCCAACCACAGCCCCAAAAGAAGCATGATGGAGCCTCAGCCTCATCAACTCCTCATG 120 Query 121 GATTGGAACAAAGCTAATGATCTTCTCACACAAGAACACGCAGCTTTTCTCAATGATCCT 180 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 121 GATTGGAACAAAGCTAATGATCTTATCACACAAGAACACGCAGCTTTTCTCCATGATCCT 180 Query 181 CACCATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGACGAAGACGAAGAG 240 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 ---CATCTCATGTTAGATCCACCTCCCGAAACCCTAATTCACTTGGAAGAAGACGAAGAG 237 Query 241 TACGATGAAGACATGGATGCGATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCC 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 238 TACGATGAAGACATGGATGCTATGAAGGAGATGCAGTACATGATCGCCGTCATGCAGCCC 297 Query 301 GTAGACATCGACCCTGCCACGGTCCCTAAGCCGAACCGCCGTAACGTAAGGATAAGCGAC 360 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 298 GTAGACATCGACCCTGCCACCGTCCCTAAGCCGAACCGCCGTAACGTAAAGATAAGCGAC 357 Query 361 GATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GATCCTCAGACGGTGGTTGCTCGTCGGCGTCGGGAAAGGATCAGCGAGAAGATCCGAATT 417 Query 421 CTCAAGAGGATCGTGCCTGGTGGTGCGAAGATGGACACAGCTTCCATGCTCGACGAAGCC 480 |||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||| Sbjct 418 CTCAAGAGGATCGTGCCTGGCGGTGCAAAGATGGACACAGCTTCGATGCTAGACGAAGCC 477 Query 481 ATACGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATT 540 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 ATCCGTTACACCAAGTTCTTGAAACGGCAGGTGAGGATTCTTCAGCCTCACTCTCAGATT 537 Query 541 GGAGCTCCTATGGCTAACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGAT 598 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GGAGCTCCTATGGCTGACCCCTCTTACCTTTGTTATTACCACAACTCCCAACCCTGAT 595 Score = 178 bits (96), Expect = 1e-43 Identities = 240/302 (79%), Gaps = 40/302 (13%) Strand=Plus/Plus Query 836 TATTGATTGTTAATTAGGGTTTGATCA-TTCTGTATGAAAGCTTTGGCCTGCAAATTAAT 894 ||||||||| | ||||||||||||||| || |||||| |||||||||||||||||||||| Sbjct 697 TATTGATTG-T-ATTAGGGTTTGATCAGTT-TGTATGCAAGCTTTGGCCTGCAAATTAAT 753 Query 895 TTTCGatatatatatatatatatggagaatatatatCAAATACTTTTTTAATTTGACTAT 954 || |||| | | | |||||||| || | || | ||||| ||| | ||||| Sbjct 754 TTCCGAT-GA-AGA-ATATATAT-----AT-CAAAT--AGTACTTGTTT-A----ACTAT 797 Query 955 AATTTGTATC-A--AT-TATCTGAATCTGATGAGTGTAGG-T-T--ATATAT--GGATTA 1004 |||||| ||| | || ||||||||||||||||||||||| | | |||||| |||||| Sbjct 798 AATTTGAATCAATTATATATCTGAATCTGATGAGTGTAGGTTATAGATATATAGGGATTA 857 Query 1005 GCAAAAAA-GA---AAACAACCATTATTACGCACC-TACATTAAAAATCATCCA--CCAA 1057 |||||||| | ||||||| ||||||| || || || ||||||||||||||| ||| Sbjct 858 GCAAAAAACAATTGAAACAACGATTATTATGC-CCTTATATTAAAAATCATCCACCCCAT 916 Query 1058 AGAAGAAACCATCCTCAAGAGGGTTCCCATATTGGAGAATAATGAAAAATTTAAGAAGAA 1117 | || ||| | |||||||||||| ||||||||||||||||||||| |||| |||| || Sbjct 917 CG-AG-AACAAGACTCAAGAGGGTTTCCATATTGGAGAATAATGAAACATTTGAGAAAAA 974 Query 1118 AA 1119 || Sbjct 975 AA 976 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57401999215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5