BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00170.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327754 jgi|Araly1|327754|fgenesh1_pm.C_scaffold_6002974 789 0.0
> Ahg327754 jgi|Araly1|327754|fgenesh1_pm.C_scaffold_6002974
Length=1143
Score = 789 bits (427), Expect = 0.0
Identities = 483/511 (95%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 332 CAGTGACGATGCAAGCCCAGAAAGAGGCACCACTTGATATGCAATGCAAAGACAAGTTCC 391
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 239 CAGTGACTATGCAAGCCCAGAAAGAGGCTCCTCTTGATATGCAATGCAAAGACAAGTTCC 298
Query 392 TTGTTCAGACTGTTGTTGTCTCTGATGGTACTACTTCCAAAGAAGTCCTCGCTGAAATGT 451
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 TTGTTCAGACTGTTGTTGTCTCTGATGGTACTACTTCCAAAGAAGTGCTCGCTGAAATGT 358
Query 452 TCAACAAGGAGGCTGGTAGAGTGATTGAGGATTTCAAACTGCGAGTTGTTTACATTCCTG 511
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 359 TCAACAAGGAGGCTGGTAGAGTGATTGAGGATTTCAAATTGCGGGTTGTTTACATCCCTG 418
Query 512 CTAATCCTCCTTCACCTGTCCCTGAAGGTTCTGAAGAAGGCAACTCTCCTATGGCTTCCC 571
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 CTAATCCCCCTTCACCCGTCCCTGAAGGATCTGAAGAAGGCAACTCTCCTATGGCTTCCC 478
Query 572 TCAACGATATTGCCTCTCAATCTGCCTCACTCTTTGATGACGTGTCAAGAACGTTTGAAG 631
||||||| | || ||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 479 TCAACGAGACTGGCTCTCAAACTGCCTCACTATTTGATGACGTGTCCAGAACGTTTGAAG 538
Query 632 AAACAAGTGAGAAATCTTCAGAGGCATGGTCTATGATTTCCAAATTGACGGAGGAGAAGA 691
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 AAACAAATGAGAAATCTTCAGAGGCGTGGTCTATGATTTCCAAATTGACGGAGGAGAAGA 598
Query 692 CTTCTGCTACTCAACAAAGTCAGAAGCTCCGTCTCGAACTGGAAATGCTGAGGAAAGAAA 751
||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 599 CTTTTGCTACTCAACAAAGTCAGAAGCTCCGACTGGAACTGGAAATGCTGAGGAAAGAAT 658
Query 752 CAAGCAAGAAGCAGTCGGGTGGTCATTCCTTGCTCTTGATGCTGCTGGTGGGTCTGCTCG 811
|||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 659 CAAGCAAGAAGCAGTCAGGTGGTCATTCCTTGGTGTTGATGCTGCTCGTGGGTCTGCTCG 718
Query 812 GTTGCGTGATTGGCTACTTATTGAACCGGAT 842
|||| |||||||||||| |||||||||||||
Sbjct 719 GTTGTGTGATTGGCTACATATTGAACCGGAT 749
Score = 335 bits (181), Expect = 5e-91
Identities = 199/208 (96%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 127 ATGACGACCGGAGATCTCGTTAATATCCATCCTACTGAGCTTAAATTCCCCTTTGAGTTG 186
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACGACCGGAGATCTCGTGAATATCCATCCTACTGAGCTTAAATTCCCTTTTGAGTTG 60
Query 187 AAGAAACAAAGTTCGTGTTCGATGCAATTGACCAACAAGACAACTACTCAATGTGTCGCT 246
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAAGCAGAGTTCGTGTTCGATGCAATTGACCAACAAGACAACTACTCAATGTGTCGCT 120
Query 247 TTTAAGGTTAAAACAACCAATCCTCGCAAATACTGTGTTCGTCCTAACACTGGTGTTGTC 306
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 121 TTTAAGGTTAAAACTACCAATCCTCGCAAATACTGTGTCCGTCCTAACACCGGTGTTGTC 180
Query 307 TTGCCCGGTGATTCCTGCAATGTTACAG 334
||||| || |||||||||||||||||||
Sbjct 181 TTGCCTGGCGATTCCTGCAATGTTACAG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5