BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00180.1
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490550 jgi|Araly1|490550|fgenesh2_kg.6__3684__AT4G00180.1 1435 0.0
> Ahg490550 jgi|Araly1|490550|fgenesh2_kg.6__3684__AT4G00180.1
Length=1109
Score = 1435 bits (777), Expect = 0.0
Identities = 964/1046 (92%), Gaps = 45/1046 (4%)
Strand=Plus/Plus
Query 1 AGTGTCTCTTCATATTTACATAAAT--AGA----TAtctctctctctctctctctctaaa 54
||||||||||||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct 1 AGTGTCTCTTCATATTTACATAAATACAAATCTCTCTCTCTCTCTCTCTCTCTCTCTAAA 60
Query 55 ccacatcttcctctccaccgttctttctctt--c-ct-tctctctctggacttcaacttc 110
||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 61 CCACATCTTCCTCTCCACCGTTCTTTCTCTTCCCTCTCTCTCTCTCTGGACTTCAACTTC 120
Query 111 tGGAGAAGTACAAGACATTTATAAAGTACTGCTCATCACCCAACACTAAACACAATTGTC 170
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 121 TGGAGAAGTACAAGACATTTATAAAGCACTGCTCATCACCCAACACT-AACACAATTGTC 179
Query 171 AAAAGGGTGTGGTGGAAGGAGAATCTACTT-CTATCTGAACATCGATCAGTCATATCTTT 229
|||| |||||||||||||||||||||| || || ||| | | | ||| | || |||
Sbjct 180 AAAA-GGTGTGGTGGAAGGAGAATCTA-TTACT-TCT-ATC-TGGAT-A-TC-GATC-AG 230
Query 230 TCAATCAAATCAAAGCCCTCCTCTCTCTCTTACTCC---TTTTTTGTTT---TAA-ATCA 282
|||||||||||||| |||| | |||||||||||||| |||||||||| || | |
Sbjct 231 TCAATCAAATCAAA-CCCT-C-CTCTCTCTTACTCCTTTTTTTTTGTTTAAAAAAGAAAA 287
Query 283 AGAAAAAGACTCCATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACC 342
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AGAAAAAGAGTCCATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACC 347
Query 343 GGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCGACACTGT 402
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 348 GGACCACTTCTCATCTTCGGAGCAGCTCTGTTACGTCCATTGCAGCTTCTGCGACACTGT 407
Query 403 CCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCA 462
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 408 CCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACCGTGACGGTGAGATGCGGCCA 467
Query 463 CTGTTCGAACCTTTTGTCGGTGACCGTGAGCATGAGAGCTCTTCTTCTTCCATCCGTTTC 522
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 468 CTGTTCGAACCTTTTGTCGGTGACTGTAAGCATGAGAGCTCTTCTTCTTCCCTCCGTTTC 527
Query 523 CAACCTTGGCCATTCCTTTTTAcctccccctcctcctcctcctcctccAAATCTTTTGGA 582
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 528 CAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTTCTCCTCCCAATCTTTTGGA 587
Query 583 GGAAATGCGAAGCGGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTC 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 588 GGAAATGCGAAGCGGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGGTGC 647
Query 643 AGCTCACCACCCGAACG-AGCATTTGGTTATGGCGACTCGCAACGGAAGATCAGTGGATC 701
||||||||||||||||| | | |||||||||| ||||||||||||| || ||||||||
Sbjct 648 AGCTCACCACCCGAACGAATC-TTTGGTTATGCCGACTCGCAACGGTAG---AGTGGATC 703
Query 702 ATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAG 761
|| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 704 ATGTGCAAGAGATGCCTCGG---CCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAG 760
Query 762 TACCATCTGCATACAACCGATTCATCAAAGAGGAGATCCAACGTATAAAGGCAGGCAACC 821
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 761 TACCATCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGTATAAAGGCAGGCAACC 820
Query 822 CTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTC 880
Query 882 ACATACACTTTGGACTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAAC 941
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 881 ACATACACTTTGGTCTCATGGCTGATCATCCTCCCACCAAGAAGGCTAACGTGCGCCAAC 940
Query 942 AGGAAGGAGAGGATGGGATGATGGGAAGAGA---AG--GG-TTTTACGGTTCAGCTGCCA 995
|||||||||||||| ||||||||||||||| || || |||||||| ||| ||||||
Sbjct 941 AGGAAGGAGAGGATTCGATGATGGGAAGAGATCGAGAAGGCTTTTACGGCTCAACTGCCA 1000
Query 996 ACGTTGGGGTGGCCCATAACTAGCTA 1021
||||||||||| ||||||||||||||
Sbjct 1001 ACGTTGGGGTGACCCATAACTAGCTA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47463031665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5