BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00190.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896008 jgi|Araly1|896008|Al_scaffold_0006_4004 2178 0.0
> Ahg896008 jgi|Araly1|896008|Al_scaffold_0006_4004
Length=1425
Score = 2178 bits (1179), Expect = 0.0
Identities = 1344/1426 (94%), Gaps = 2/1426 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTTCGGAAATGAAATGTGCGATGAAACGCCGCATCCGGGTGAATGCAAGACTCTA 60
|||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATGGTTTTTGGAAATGAAATGTGTGATGAAACGCCGCACCCGAGTGAATGCAAGACTCTG 60
Query 61 CTGATTAAACACAAACCCATAAGAAGCACTACACAGTTCCTCCAAGTGTCCGTGGAACGA 120
|||||| |||||||||||||||||||||||| ||||||| | ||||||||||| ||||||
Sbjct 61 CTGATTGAACACAAACCCATAAGAAGCACTAAACAGTTCTTGCAAGTGTCCGTAGAACGA 120
Query 121 ACACTAGATGGGGCTGTCAAAGCCAAGAGTGACACGTATTTTCTTGAGCCACAATTTGGT 180
||||||||||| ||||||||||||||||| |||||||| | ||||| ||||||||||||
Sbjct 121 ACACTAGATGGAGCTGTCAAAGCCAAGAGCGACACGTACTCTCTTGGGCCACAATTTGGC 180
Query 181 TCAAAGCAAGCTTGGGAGGAATGTATGGATCTGTACGAGCAGACTATTCACAGGCTCAAC 240
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TCAAAGCAAGCTTGGGAGGACTGTATGGATCTGTACGAGCAGACTATCCACAGGCTCAAC 240
Query 241 GAGAGCGTGTTGTGTCCCAAGAACGTTTGCTCTAGGTCAGACGTGCAAGCATGGCTCAGC 300
|||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 241 CAGAGTGTGCTGTGTCCCAAGAACGCGTGCTCTAGATCAGACGTGCAAGCATGGCTCAGC 300
Query 301 ACCGCACTCACCAACCTAGACACATGTCAGGAAGAGATGTCAGAACTCGGTGTCTCGTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGCACTCACCAACCTAGACACATGTCAGGAAGAGATGTCAGAACTCGGTGTCTCGTCT 360
Query 361 CATTCCTTGGAGAGCATTACCATTGATGTCATTAACACCTTGGCCATCAACAAGAGGATG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CATTCCTTGGAGAGCATTACCATTGATGTCATTAACACCTTGGCCATCAACAAGAGGACG 420
Query 421 GAACAAAACGGTAAGGAGTTTGGGATATCGAAAATAACAATGAAAACACTATCTATAGGT 480
|||| |||||| |||| ||||||| |||||||| |||||||||||| || |||||||||
Sbjct 421 GAACCAAACGGGAAGGTGTTTGGGGTATCGAAAGTAACAATGAAAATACCGTCTATAGGT 480
Query 481 GAAAAAGTGGATGTAGTGGTGGCTCAAGATGGTTCCGGGGACTACAAAACTATCCAAGAG 540
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 481 AAAAAAGTGGATGTAGTGGTGGCTCAAGATGGCTCCGGGGACTACAAGACCATCCAAGAG 540
Query 541 GCCGTGAATGGTGCTGGAGAGAGGCTCAAAGGAAGCCCAAGGTATGTCATACATGTCAAG 600
|||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 541 GCCGTGAATGGTGCCGGAGAGAGGCCCAAAGGAAGCCCTAGGTATGTCATACATGTCAAG 600
Query 601 CAAGGCGTTTACGAGGAATATGTCAATGTAGGAATCAAGTCTAATAACATCATGATCACT 660
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 601 CAAGGCATTTACGAGGAATATGTCAATATAGGAATCAAGTCTAATAACATCATGATCGTT 660
Query 661 GGCGATGGTATCGGCAAAACCATAATCACCGGTGACAAAAGCAAGGGCCGAGGATTTTCC 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGCGATGGTATGGGCAAAACCATAATCACCGGTGACAAAAGCAAGGGCCGAGGATTTTCC 720
Query 721 ACTTACAAATCTGCCACTTTTGTGGCTGAGGGGGACGGTTTCGTGGGACGAGACATAACA 780
|||| ||| || ||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 721 ACTTTCAAGTCCGCCACTTTTGTGGCTGAAGGGGATGGTTTCGTGGGGCGAGACATAACG 780
Query 781 ATCAGGAACACGGCAGGACCGGAAAACCATCAGGCGGTGGCTCTCAGATCGAATTCAGAC 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 ATCAGGAACACGGCAGGACCGGAAAACCATCAGGCGGTGGCTCTCAGATCGGATTCAGAC 840
Query 841 ATGTCAGTGTTTTACAGATGTAGCATTGAAGGCTATCAAGACACACTCTACGTGCACTCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 ATGTCAGTGTTTTACAGATGTAGCATTGAAGGCTATCAAGACACACTCTACGTCCACTCC 900
Query 901 GGTCGTCAGTTTTTCAGGGAGTGCGACATATACGGAACCGTTGACTTCATTTTCGGAAAC 960
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 901 GGTCGTCAGTTTTTCAGGGAGTGCGACATATACGGCACTGTCGACTTCATTTTCGGAAAC 960
Query 961 GCCGCAGCTGTTTTACAAAACTGTCGGATATTTGCACGTAACCCACCGAATGGAGTCAAC 1020
||||| ||| |||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 GCCGCTGCTTTTTTCCAGAACTGTCTGATATTTGCACGTAACCCACCGAATGGAGTCAAC 1020
Query 1021 ACCATAACGGCACAGAGCCGGTTCAACCCGAATCAGACAACAGGAATCGTAATCCATAAC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACCATAACGGCACAGAGCCGGTTCAACCCGAATCAGACAACAGGAATCGTAATCCATAAC 1080
Query 1081 TCCGTGGTGAAAGGAGCTCCGGGGGTACAGTTAGGAGGCGTGAAAACGTATTTGGGCCGT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1081 TCCGTGGTGAAAGGAGCTCCGGGGGTACAGTTAGGAGGCGTGAAAACGTATCTGGGGCGT 1140
Query 1141 CCGTGGAGGTCGTACGCACGGACCGTGGTGATCGGGACGTATCTTGATACGTTGATCGAA 1200
|| |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 1141 CCATGGAGGTCGTACGCACGGACGGTGGTGATGGGGACGCATCTTGATACGTTGATCGAA 1200
Query 1201 CCCAACGGATGGATTGATTGGGATAATGTAACGGCTCTAAGCACGTTGTATTATGGGGAG 1260
||||| |||||||| ||||||| |||||||||||| |||||||||||||| || ||||||
Sbjct 1201 CCCAAAGGATGGATCGATTGGGGTAATGTAACGGCGCTAAGCACGTTGTACTACGGGGAG 1260
Query 1261 TATCAAAACTCGGGACCGGGTTCGGGGACAGAGAACCGGGTTGATTGGGCCGGGTTTCAC 1320
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1261 TATCAAAACTCGGGACCGGGTTCGGGTACAGAGAACCGGGTTGATTGGGCCGGGTTTCAC 1320
Query 1321 GTGATATCTGATATCCAA-GAAGCTCGAGAGTTTACGTTACCCAAATTCATCGACTCTGC 1379
||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1321 GTGATATCTGATATC-AATGAAGCTCGACAGTTTACGTTACCCAAATTCATCGACGCTGC 1379
Query 1380 TTCATGGTTACCGCCTACCAAAGTGCCTTTCACCATCAATCTCTAA 1425
||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1380 TTCATGGTTGCCACCTACCAAAGTGCCTTTCACCATCAATCTCTAA 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5