BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00210.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327750 jgi|Araly1|327750|fgenesh1_pm.C_scaffold_6002970 887 0.0
> Ahg327750 jgi|Araly1|327750|fgenesh1_pm.C_scaffold_6002970
Length=645
Score = 887 bits (480), Expect = 0.0
Identities = 601/656 (92%), Gaps = 22/656 (3%)
Strand=Plus/Plus
Query 8 ATGAGCGGAAGCACCACCGGTTGTGGAGGTCCATGCGGCGCATGTAAGTTTCTCCGACGG 67
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||
Sbjct 1 ATGAGCGGAAGCACCACCGGCAGTGGAGGTCCGTGCGGCGCATGTAAGTTTCTCCGGCGG 60
Query 68 AAATGCGTTGCTGACTGTGTCTTCGCTCCCTACTTTGATTCGGTGGAAGGGACGTCTCAT 127
|||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 61 AAATGCGTGGCTGAATGTGTCTTCGCTCCCTACTTCGATTCGGAGGAAGGGACGTCTCAT 120
Query 128 TTCACGGCCGTGCACAAGGTTTTCGGGGCGAGCAACGCCTCCAAGCTCCTCATGATGATT 187
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCACGGCGGTGCACAAGGTTTTCGGGGCGAGCAACGCCTCCAAGCTCCTCATGATGATT 180
Query 188 CCAGCCAGCCGGAGACTGGACGCTGTCGTCACGCTTACTTACGAGGCATTGGCTAGGCTT 247
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGGCCAGCCGGAGACTGGACGCCGTCGTCACGCTTACTTACGAGGCATTGGCTAGGCTT 240
Query 248 CGCGATCCCGTCTACGGATGCGTTGGTCATATCTTCGCCCTTCAACATCAGGTGATGAAT 307
||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 241 CGCGATCCCGTCTACGGATGCGTTGGTCATATCTTCGCCCTTC-A-A-C---------A- 287
Query 308 CTACAGGCGGAGTTAGCTTACGTCCAAACTCAACTCTCAACATTACAAGGTCTTCCTCCG 367
| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 288 -T-CAGGCGGAGTTAGCTTACGTCCAAACTCAACTTTCAACCTTACAAGGCCTTCCTCCG 345
Query 368 CCGAATTCTCAAAACAATTCACGGACAGAAGCAGCCTCTTCATCTAATGTGCCACTCATT 427
|||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 346 CCGAATCCTCAAAACAATTCACGGACAGAAGCAGCCTCTTCGTCTAATGCGCCACCCATT 405
Query 428 TCTTCTGTCGATAGCAAA-GACAATATGTCTTCCTCGTCGTCACACATTCCTTGTATGTC 486
||||| ||||||| ||| | |||| |||||||| |||||| ||||||||||||||||||
Sbjct 406 TCTTCCGTCGATAATAAAAG-CAATGTGTCTTCCGCGTCGTTACACATTCCTTGTATGTC 464
Query 487 ACAACAACAAGAACAAGAACAGCCAAAAGAAGCTATTGAGGTCCCAACAGAGTCAGTGGA 546
||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 465 ACAACAACAAGAA---GAACAGGCAAAAGAAGCTATTGAGGTCTCAACAGAGTCAGTGGA 521
Query 547 TCTTAGCACATTCTTTGGCCTGGAAAATCCAGTGGATGAGGACGGTGATCTTAACGCTCT 606
|||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 522 TCTTAGCACATTGTTTGGCCTAGAAGATCCAGTGGATGAGGACGGTGATCTGAACGCTCT 581
Query 607 TGCCCGTGAGTTCTTCA-CTAAGTATTTGACCGGAGGCAAATACCGACCATCTTCT 661
||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||
Sbjct 582 TGCCCGTGAGTTCTT-ATCTAAGTATTTGACCGGTGGCAAATGCCGTCCATCTTCT 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5