BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00220.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490546 jgi|Araly1|490546|fgenesh2_kg.6__3680__AT4G00220.1 1502 0.0
> Ahg490546 jgi|Araly1|490546|fgenesh2_kg.6__3680__AT4G00220.1
Length=940
Score = 1502 bits (813), Expect = 0.0
Identities = 906/949 (95%), Gaps = 13/949 (1%)
Strand=Plus/Plus
Query 1 AAAAGCATCATAATCTCGATGAGTTAAATCCATGTATCTCAAAACCCTAATCACCACTTA 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAAGCATCATAGTCTCGATGAGTTAAATCCATGTATCTCAAAACCCTAATCACCAATTA 60
Query 61 GCTAGTAAAAGGAAAGGAAAATAAAAAGG-ACTTGTGTGGTAGAA-AAGGAAGATGAGCA 118
||||||||||| |||||||||| ||||| | ||||| |||| || ||||||||||||||
Sbjct 61 GCTAGTAAAAGAAAAGGAAAAT--AAAGGTAGTTGTGAGGTA-AATAAGGAAGATGAGCA 117
Query 119 GTAGCGGAAACCCTAGCAGCAGCAGCGGTGGAGGAGGAGGACCGTGCGGCGCGTGCAAGT 178
|||||||||||||| |||||||||||| |||||||| || ||||||||||||||||
Sbjct 118 GTAGCGGAAACCCT---AGCAGCAGCGGT---GGAGGAGGCCCTTGCGGCGCGTGCAAGT 171
Query 179 TCTTGAGAAGGAAGTGTGTCGCTGGCTGCATCTTCGCTCCTTACTTTGACTCCGAGCAAG 238
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 172 TCTTGAGAAGGAAGTGTGTCGCTGGCTGCATCTTCGCGCCTTACTTTGACTCCGAGCAAG 231
Query 239 GAGCGGCGCACTTCGCGGCGGTTCACAAGGTGTTCGGAGCGAGCAACGTCTCCAAACTCC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GAGCGGCGCACTTCGCGGCGGTTCACAAGGTGTTCGGAGCGAGCAACGTCTCCAAACTCC 291
Query 299 TCCACCATGTTCCCGAGCATAAACGACCAGACGCCGTCGTTTCAATCTGCTTTGAGGCTC 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCCAACATGTTCCCGAGCATAAACGACCAGACGCCGTCGTTTCAATCTGCTTTGAGGCTC 351
Query 359 AAGCTCGTCTCAGAGACCCTATCTACGGCTGCGTCTCTCACATCGTCTCTCTTCAGCAAC 418
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 352 AGGCTCGTCTCAGAGACCCTATTTACGGCTGCGTCTCTCACATCGTCTCTCTTCAGCAAC 411
Query 419 AGGTGGTAAGTTTGCAAACTGAGCTTTCATATCTACAAGCACACTTAGCAACTCTAGAGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGGTGGTAAGTTTGCAAACTGAGCTTTCATATCTACAAGCACACTTAGCAACTCTAGAGC 471
Query 479 TGCCACAACCTCAACCACCACAGGTTCCGGTGTCATCTTCAGGATCTCTACAGGCTCTTT 538
|||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
Sbjct 472 TGCCACAACCTCAACCACCACAGGTTCCGGTGTCGTCTTCTGGATCTCTGCAGGCTCTCT 531
Query 539 CCATAACGGACCTCCCAACAATATCACCGTCGGTGTACGACCTCTCCTCCATCTTCGAGC 598
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 532 CCATAACGGACCTCCCATCAATATCGCCGTCGGTGTACGACCTCTCCTCCATCTTCGAGC 591
Query 599 CGGTCATGTCCTCCACTTGGGCCATGCAGCAACAACCACGACCGTCTGATCATCTCTTCG 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CGGTCATGTCCTCCACGTGGGCCATGCAGCAACAACCACGACCGTCTGATCATCTCTTCG 651
Query 659 GCGTCCCGTCATCGTCCAATATGGGCGGAGGCGGTGAGCTCCAAGCACTGGCGCGTGAGT 718
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 652 GCGTCCCGTCATCGTCTAATATCGGCGGAGGCGGTGAGCTCCAAGCACTGGCGCGTGAGT 711
Query 719 TTATTCACGGTGGGCAAATGCCAGCTCAGCCATCGCCGGGAACCAGTGGTTCTGCCTCGT 778
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 712 TTATTCACGGTGGGCAAATGCCAGCTCAGCCATCCCCGGGAACCAGTGGTTCTGGCTCAA 771
Query 779 CAGTGATAAAACGAGAATGAAGTTATTTTTATCGTATGTTTGTTTATTTGGACCGTAAGA 838
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 772 CAGTGATAAAACGAGAATGAAGTTATTTCTATAAAATGTTTGTTTATTTGGACCGTAAGA 831
Query 839 GATCTATAGTTAGCCATATGTTTCTCCTTGTAATATATATA--CTTGGTCGAATTCGTAT 896
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 832 GATCTATAGTTAGCGATATGTTTCTCCTTGTAATATATATATACTTGGTCGAATTCGTAT 891
Query 897 TTAAATTGTTGTCTAGAATGTTAATATAAGAACTATATGATTTACATTG 945
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 892 TTAAATTGTTGGCTAGAATGTTAATATAAGAACTATATGATTTACATTG 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5