BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G00230.1
Length=2427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490544 jgi|Araly1|490544|fgenesh2_kg.6__3678__AT4G00230.1 3579 0.0
> Ahg490544 jgi|Araly1|490544|fgenesh2_kg.6__3678__AT4G00230.1
Length=2352
Score = 3579 bits (1938), Expect = 0.0
Identities = 2190/2310 (95%), Gaps = 24/2310 (1%)
Strand=Plus/Plus
Query 21 GTCAAAATGTTCTTGCCATCATCATCTACTTGTTCTTGTTA-TG-----GTTG-T-T-CT 71
||||||||||||| | ||||||||||||||||||||| ||| || ||| | | ||
Sbjct 9 GTCAAAATGTTCTCGTCATCATCATCTACTTGTTCTTTTTATTGTTCTTCTTGATGTACT 68
Query 72 TTGGATATCACCAAGATATGCTTCAGCCGAAGATGAACATGCAAAGGATTTCTATATCAT 131
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TTCGATATCACCAGGATATGCTTCAGCCGAAGATGAACATGCAAAGGATTTCTATATCAT 128
Query 132 ATATTTGGGAGATCGACCGGATAATACAGAAGAAACTATCAAGACACACATAAATCTTCT 191
||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct 129 ATATTTGGGAGATCGACTGGATAATACAGAAGAAGCTATCAAGAGACACATAAATCTTCT 188
Query 192 ATCATCTTTGAATATCAGCCAAGAAGAAGCAAAGGAAAGAAAAGTATATAGTTACACTAA 251
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CTCGTCTTTGAATATGAGCCAAGAAGAAGCAAAGGAAAGAAAAGTATATAGTTACACTAA 248
Query 252 AGCCTTCAACGCTTTTGCTGCCAAGCTTTCTCCACATGAAGCTAAGAAGATGATGGAGAT 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AGCCTTCAACGCTTTTGCTGCCAAGCTTTCTCCACATGAAGCTAAGAAGATGATGGAGAT 308
Query 312 GGAAGAAGTTGTTAGTGTATCCCGAAATCAATATCGCAAACTTCACACGACAAAATCTTG 371
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 309 GGAAGAAGTTGTTGGTGTATCCCGAAATCAATATCGCAAACTTCACACAACAAAATCATG 368
Query 372 GGATTTTGTTGGACTTCCTTTGACAGCAAAAAGACATCTAAAAGCAGAGAGAGATGTTAT 431
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GGACTTCGTTGGACTTCCTCTGACAGCAAAAAGACATCTAAAAGCAGAGAGAGATGTTAT 428
Query 432 TATTGGTGTTCTTGATACAGGAATAACGCCAGACTCAGAGAGTTTCC-TAGACCATGGTC 490
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 429 TATTGGTGTTCTTGATACAGGAATAACGCCAGAGTCAGAGAGTTTCCAT-GACCATGGTC 487
Query 491 TAGGACCTCCTCCGGCTAAATGGAAAGGATCTTGTGGACCTTATAAAAATTTCACCGGAT 550
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 488 TAGGCCCTCCTCCGGCTAAATGGAAAGGATCTTGTGGACCTTACAAAAATTTCACCGGAT 547
Query 551 GCAACAACAAAATAATCGGCGCCAAGTACTTCAAGCACGACGGCAATGTGCCTGCCGGCG 610
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 548 GCAACAACAAAATAATCGGCGCCAAGTACTTCAAGCACGACGGCTATGTGCCTACCGGCG 607
Query 611 AAGTCCGATCACCGATCGATATCGACGGACATGGGACGCACACGTCATCCACCGTAGCCG 670
|| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 608 AAATCCGATCACCGATCGATATCGACGGCCATGGGACGCACACGTCATCTACCGTAGCCG 667
Query 671 GCGTTTTAGTCGCAAACGCGAGTCTCTATGGCATAGCAAACGGCACCGCCCGCGGCGCGG 730
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 668 GCGTTTTAGTCGCTAACGCGAGTCTCTATGGCATAGCAAACGGTACCGCCCGCGGCGCGG 727
Query 731 TTCCGTCGGCGAGGTTAGCGATGTACAAGGTTTGTTGGGCGAGATCCGGCTGTGCTGACA 790
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 728 TTCCGTCGGCGAGGTTGGCGATGTACAAGGTTTGTTGGGCGAGATCCGGCTGTGCCGATA 787
Query 791 TGGACATACTCGCCGGATTCGAAGCAGCGATTCACGACGGCGTAGAAATTATCTCCATCT 850
||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 788 TGGACATCCTCGCCGGATTCGAAGCAGCGATTCACGACGGCGTTGACATTATATCCATCT 847
Query 851 CTATCGGCGGTCCAATCGCCGATTACTCTTCCGATTCGATATCCGTCGGGTCGTTTCACG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTATCGGCGGTCCAATCGCCGATTACTCTTCCGATTCGATATCCGTCGGGTCGTTTCACG 907
Query 911 CGATGAGGAAAGGAATCCTCACGGTGGCGTCCGCCGGTAACGACGGGCCTAGCTCAGGAA 970
||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |
Sbjct 908 CGATGAGGAAAGGGATCCTCACGGTGGCGTCCGCCGGGAACGACGGACCGAGCTCAGGCA 967
Query 971 CTGTAACGAACCATGAGCCGTGGATATTGACGGTTGCTGCAAGTGGAATCGATCGGACGT 1030
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 968 CTGTAACGAACCATGAGCCTTGGATATTGACGGTTGCGGCAAGCGGAATCGATCGGACGT 1027
Query 1031 TCAAGAGCAAAATAGATCTCGGCAACGGCAAATCCTTCTCTGGGATGGGAATAAGCATGT 1090
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TCAAGAGCAAGATAGATCTCGGCAACGGCAAATCCTTCTCTGGGATGGGAATAAGCATGT 1087
Query 1091 TTAGTCCAAAAGCCAAATCGTATCCGCTTGTAAGTGGTGTTGATGCTGCTAAGAACACAG 1150
||| || |||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 1088 TTAACCCCAAAGCCAAATCGTATCCGCTTGTAAGCGGCGTTGATGCTGCTAAGACCACAG 1147
Query 1151 ACGATAAGTACTTGGCTAGGTATTGTTTCTCTGATTCTTTGGATCGAAAGAAGGTGAAGG 1210
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1148 ACGATAAGTACTTGGCTAGGTACTGTTTCTCTGATTCTTTGGACCGAAAGAAGGTCAAGG 1207
Query 1211 GAAAGGTAATGGTGTGTAGAATGGGAGGAGGTGGTGTGGAGTCTACTATCAAAAGCTATG 1270
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1208 GAAAGGTAATGGTGTGTAGAATGGGGGGAGGTGGTGTGGAGTCGACTATTAAAAGCTATG 1267
Query 1271 GAGGTGCTGGTGCCATCATTGTAAGTGATCAATATCTTGACAATGCTCAGATTTTCATGG 1330
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1268 GAGGTGCTGGTGCGATCATTGTAAGTGATCAATATCTTGACAACGCTCAGATTTTCATGG 1327
Query 1331 CACCTGCCACCAGTGTTAATAGCTCCGTTGGCGATATTATCTACCGATATATCAACTCCA 1390
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1328 CACCTGCCACCAGTGTTAATAGCTCCGTTGGAGATATCATCTACCGATATATCAACTCCA 1387
Query 1391 CAAGATCAGCG-TCGGCTGTGATTCAGAAAACTC-GGCAAGTGACAATCCCTGCTCCATT 1448
||||||| || |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1388 CAAGATC-GCCATCGGCTGTGATTCAGAAAAC-CAGGCAAGTGACAATCCCTGCTCCATT 1445
Query 1449 TGTTGCTTCTTTTTCATCAAGAGGTCCCAATCCGGGATCAATACGTCTTCTCAAGCCTGA 1508
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1446 TGTTGCTTCTTTTTCGTCAAGAGGTCCCAATCCGGGATCAACACGCCTTCTCAAGCCTGA 1505
Query 1509 TATCGCTGCACCCGGGATTGATATATTGGCGGCCTTCACTCTAAAGAGATCACTGACTGG 1568
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1506 TATCGCTGCACCCGGGATTGATATATTGGCCGCCTTCACTCTAAAGAGATCACTGACTGG 1565
Query 1569 GTTAGATGGTGACACCCAGTTCTCAAAATTCACCATCCTGTCTGGCACCTCAATGGCCTG 1628
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1566 GTTAGATGGTGACACCCAATTCTCAAAATTCACCATCCTGTCTGGTACCTCAATGGCATG 1625
Query 1629 CCCTCATGTTGCTGGTGTAGCTGCGTACGTCAAGTCTTTTCATCCGGATTGGAC-CCCTG 1687
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1626 CCCTCATGTTGCTGGTGTAGCTGCGTACGTCAAGTCTTTCCATCCAGATTGGACACCCT- 1684
Query 1688 CTGCCATCAAATCCGCCATCATTACCTCAGCAAAACCGATAAGCCGGAGAGTGAACAAGG 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 CTGCCATCAAATCCGCCATCATTACCTCAGCAAAACCGATAAGCCGGAGAGTGAACAAGG 1744
Query 1748 ACGCAGAGTTTGCTTATGGAGGAGGCCAAATAAACCCACGACGAGCCGCAAGCCCTGGCT 1807
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 ACGCAGAGTTCGCTTATGGGGGAGGCCAAATAAACCCACGACGAGCCGCAAGCCCTGGCT 1804
Query 1808 TAGTCTACGACATGGACGACATCTCCTATGTTCAGTTCTTGTGCGGCGAAGGCTACAACG 1867
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1805 TAGTCTACGACATGGACGACATCTCCTATGTTCAGTTCTTGTGTGGCGAAGGCTACAACG 1864
Query 1868 CAACCACTCTAGCTCCATTGGTGGG-TACACGCTCCGTGAGCTGTTCCTCCATTGTCCCT 1926
|||||||||| |||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1865 CAACCACTCTGGCTCCATTGGTGGGGT-CACGCTCCGTGAGCTGCTCCTCCATTGTCCCT 1923
Query 1927 GGACTCGGCCACGATTCCCTCAACTACCCAACAATCCAACTCACGTTGAGATCCGCCAAA 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1924 GGACTCGGCCACGATTCCCTCAACTACCCAACAATCCAACTCACGTTGAGATCTGCCAAA 1983
Query 1987 ACGTCCACATTGGCTGTGTTCAGGCGGAGAGTCACCAACGTGGGACCACCGTCGTCGGTC 2046
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1984 ACGTCCACATTGGCCGTGTTCAGGCGGAGAGTCACCAACGTGGGAGCACCGTCGTCGGTC 2043
Query 2047 TACACCGCCACCGTCCGAGCACCGAAAGGAGTAGAAATCACGGTGGAGCCACAGAGTTTG 2106
|||| || ||||||| | |||||||||||||| ||||||||||||||||||| |||| ||
Sbjct 2044 TACAACGTCACCGTCAGGGCACCGAAAGGAGTTGAAATCACGGTGGAGCCACGGAGTCTG 2103
Query 2107 TCATTTTCAAAGGCTTCACAAAAGAGAAGCTTCAAAGTGGTGGTGAAGGCCAAACAAATG 2166
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2104 TCGTTTTCAAAGGCTTCACAGAAGAGGAGCTTCAAAGTGGTGGTGAAGGCCAAACAAATG 2163
Query 2167 ACTCCTGGGAAGATTGTGTCCGGCTTGCTCGTGTGGAAGAGCCCACGTCACTCTGTTCGT 2226
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2164 ATTCCTGGGAAGATTGTGTCAGGCTTGCTCGTGTGGAAGAGCCCACGTCACTCTGTTCGG 2223
Query 2227 AGCCCCATTGTTATTTATAGTCCTACTTCGGATTGAAATTAATCACATC-TCCAAAACAA 2285
|||||||||||||| || ||||||||||| |||| |||||||||||||| || | | |||
Sbjct 2224 AGCCCCATTGTTATCTACAGTCCTACTTCTGATT-AAATTAATCACATCCTC-ATA-CAA 2280
Query 2286 -CATTTTACTTCAATGTAATCCTCTCACTT 2314
|||||||||||||||||||| ||||||||
Sbjct 2281 ACATTTTACTTCAATGTAATCATCTCACTT 2310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91454678245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5